Sequence Similarity Clusters for the Entities in PDB 6IAP

Entity #1 | Chains: A
Natural cytotoxicity triggering receptor 1 protein, length: 182 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 46044
95 % 2 2 30286 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.6
PDBFlex
90 % 2 2 29143
70 % 2 2 35458
50 % 2 2 30784
40 % 22 32 1415
30 % 27 39 1212
Entity #2 | Chains: D
Fab NKp46-4 light chain protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 71456
95 % 1 1 58957
90 % 315 538 4
70 % 1505 2391 2
50 % 1879 3030 2
40 % 1879 3030 2
30 % 3821 6153 1
Entity #3 | Chains: E
Fab NKp46-4 heavy chain protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 71455
95 % 1 1 58956
90 % 1 1 55526
70 % 1816 2928 1
50 % 1917 3079 1
40 % 1917 3079 1
30 % 3822 6153 1
Entity #4 | Chains: H
Fab NKp46-1 heavy chain protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 71458
95 % 2 2 42400 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 1.1
PDBFlex
90 % 2 2 40411
70 % 1817 2928 1
50 % 1918 3079 1
40 % 1918 3079 1
30 % 3823 6153 1
Entity #5 | Chains: L
Fab NKp46-1 light chain protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 51966
95 % 9 10 5546 Flexibility: Low
Max RMSD: 7.7, Avg RMSD: 2.3
PDBFlex
90 % 316 538 4
70 % 1506 2391 2
50 % 1880 3030 2
40 % 1880 3030 2
30 % 3824 6153 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3P2T 1 A Leukocyte immunoglobulin-like receptor subfamily B member 4 residues in UNP 24-219 9606
2 1NKR 1 A P58-CL42 KIR EXTRACELLULAR DOMAIN 9606
3 1UGN 1 A Leukocyte immunoglobulin-like receptor 1 Ligand binding domain (domain1 and 2) 9606
4 1OLL 1 A NK RECEPTOR EXTRACELLULAR DOMAIN, RESIDUES 25-212 9606
5 5EIQ 1 A Osteoclast-associated immunoglobulin-like receptor 9606
6 2GW5 1 A Leukocyte immunoglobulin-like receptor subfamily B member 2 precursor N-terminal Domains 1 and 2 9606
7 2D3V 1 A leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1 Extracellular domain 9606
8 5OU7 1 A, B, C, D Platelet glycoprotein VI 9606
9 6BCS 1 A Leukocyte immunoglobulin-like receptor subfamily B member 2 9606
10 5CJ8 1 A Osteoclast-associated immunoglobulin-like receptor UNP RESIDUES 31-215 9606
11 1G0X 1 A LEUCOCYTE IMMUNOGLOBULIN-LIKE RECEPTOR-1 D1D2 LIGAND BINDING DOMAIN 9606
12 1UCT 1 A Immunoglobulin alpha Fc receptor RESIDUES 0-217 9606
13 5EIV 1 A, B Osteoclast-associated immunoglobulin-like receptor 9606
14 3D2U 3 D, H Leukocyte immunoglobulin-like receptor subfamily B member 1 Ig-like C2-type 1 and C2-type 2 domains 9606
15 2OTP 1 A, B Leukocyte immunoglobulin-like receptor subfamily A member 2 D1D2, Ig-like C2-type 9606
16 1M4K 1 A KILLER CELL IMMUNOGLOBULIN-LIKE RECEPTOR 2DS2 9606
17 6EWO 4 D, H LIR-1 9606
18 2GI7 1 A, B GPVI protein Collagen binding domain, residues 21-203 9606
19 5CJB 1 A Osteoclast-associated immunoglobulin-like receptor UNP RESIDUES 31-215 9606
20 5OU8 1 A, B Platelet glycoprotein VI 9606
21 6EWA 4 D, H LIR-1 9606
22 4N8V 1 G, I Killer cell immunoglobulin-like receptor 2DS2 UNP residues 22-221 9606
23 4LLA 1 A, B, C Leukocyte immunoglobulin-like receptor subfamily B member 2 9606
24 5OU9 1 A, B Platelet glycoprotein VI 9606
25 2DYP 4 D Leukocyte immunoglobulin-like receptor subfamily B member 2 9606
26 3H8N 1 A Killer cell immunoglobulin-like receptor 2DS4 9606
27 6IAP 1 A Natural cytotoxicity triggering receptor 1 9606
28 3WYR 1 A, B Killer cell immunoglobulin-like receptor 2DL4 extracellular domain, UNP residues 24-218 9606
29 4LL9 1 A, B, C Leukocyte immunoglobulin-like receptor subfamily B member 1 D3D4 domain, UNP residues 222-417 9606
30 1EFX 4 D, E NATURAL KILLER CELL RECEPTOR KIR2DL2 EXTRACELLULAR D1 AND D2 DOMAINS 9606
31 2DLI 1 A PROTEIN (MHC CLASS I NK CELL RECEPTOR PRECURSOR) EXTRACELLULAR HLA-CW3 RECOGNITION DOMAIN 9606
32 2DL2 1 A PROTEIN (MHC CLASS I NK CELL RECEPTOR PRECURSOR (P58 NATURAL KILLER CELL RECEPTOR CLONE CL-43)) EXTRACELLULAR HLA-CW3 RECOGNITION DOMAIN 9606
33 1VDG 1 A, B Leukocyte immunoglobulin-like receptor subfamily B member 1 Ligand binding domain (domain 1 and 2) 9606
34 6EWC 4 D, H Leukocyte immunoglobulin-like receptor subfamily B member 1 9606
35 1UFU 1 A Immunoglobulin-like transcript 2 Ligand binding domain (domain1 and 2) 9606
36 4NO0 4 D Leukocyte immunoglobulin-like receptor subfamily B member 1 UNP residues 27-221 9606
37 1OVZ 1 A, B Immunoglobulin alpha Fc receptor ectodomain 9606
38 1P7Q 4 D leukocyte immunoglobulin-like receptor 1 residue 25-221 9606
39 1OW0 2 C, D Immunoglobulin alpha Fc receptor ectodomain 9606