Sequence Similarity Clusters for the Entities in PDB 6IAP

Entity #1 | Chains: A
Natural cytotoxicity triggering receptor 1 protein, length: 182 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 46254
95 % 2 2 33425 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.6
PDBFlex
90 % 2 2 40223
70 % 2 2 35591
50 % 2 2 25149
40 % 22 33 1376
30 % 27 40 1185
Entity #2 | Chains: D
Fab NKp46-4 light chain protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 71708
95 % 1 1 56016
90 % 322 553 4
70 % 1517 2416 2
50 % 1898 3067 2
40 % 1898 3067 2
30 % 3859 6228 1
Entity #3 | Chains: E
Fab NKp46-4 heavy chain protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 71707
95 % 1 1 59178
90 % 1 1 55786
70 % 1835 2965 1
50 % 1936 3117 1
40 % 1936 3117 1
30 % 3860 6228 1
Entity #4 | Chains: H
Fab NKp46-1 heavy chain protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 71710
95 % 2 2 35609 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 1.1
PDBFlex
90 % 2 2 29809
70 % 1836 2965 1
50 % 1937 3117 1
40 % 1937 3117 1
30 % 3861 6228 1
Entity #5 | Chains: L
Fab NKp46-1 light chain protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 46255
95 % 9 10 5523 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.9
PDBFlex
90 % 323 553 4
70 % 1518 2416 2
50 % 1899 3067 2
40 % 1899 3067 2
30 % 3862 6228 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3P2T 1 A Leukocyte immunoglobulin-like receptor subfamily B member 4 residues in UNP 24-219 9606
2 1NKR 1 A P58-CL42 KIR EXTRACELLULAR DOMAIN 9606
3 1UGN 1 A Leukocyte immunoglobulin-like receptor 1 Ligand binding domain (domain1 and 2) 9606
4 1OLL 1 A NK RECEPTOR EXTRACELLULAR DOMAIN, RESIDUES 25-212 9606
5 2GW5 1 A Leukocyte immunoglobulin-like receptor subfamily B member 2 precursor N-terminal Domains 1 and 2 9606
6 2D3V 1 A leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1 Extracellular domain 9606
7 5OU7 1 A, B, C, D Platelet glycoprotein VI 9606
8 6BCS 1 A Leukocyte immunoglobulin-like receptor subfamily B member 2 9606
9 1G0X 1 A LEUCOCYTE IMMUNOGLOBULIN-LIKE RECEPTOR-1 D1D2 LIGAND BINDING DOMAIN 9606
10 3D2U 3 D, H Leukocyte immunoglobulin-like receptor subfamily B member 1 Ig-like C2-type 1 and C2-type 2 domains 9606
11 2OTP 1 A, B Leukocyte immunoglobulin-like receptor subfamily A member 2 D1D2, Ig-like C2-type 9606
12 1M4K 1 A KILLER CELL IMMUNOGLOBULIN-LIKE RECEPTOR 2DS2 9606
13 6EWO 4 D, H LIR-1 9606
14 2GI7 1 A, B GPVI protein Collagen binding domain, residues 21-203 9606
15 5OU8 1 A, B Platelet glycoprotein VI 9606
16 6EWA 4 D, H LIR-1 9606
17 4N8V 1 G, I Killer cell immunoglobulin-like receptor 2DS2 UNP residues 22-221 9606
18 4LLA 1 A, B, C Leukocyte immunoglobulin-like receptor subfamily B member 2 9606
19 5OU9 1 A, B Platelet glycoprotein VI 9606
20 2DYP 4 D Leukocyte immunoglobulin-like receptor subfamily B member 2 9606
21 3H8N 1 A Killer cell immunoglobulin-like receptor 2DS4 9606
22 6IAP 1 A Natural cytotoxicity triggering receptor 1 9606
23 3WYR 1 A, B Killer cell immunoglobulin-like receptor 2DL4 extracellular domain, UNP residues 24-218 9606
24 4LL9 1 A, B, C Leukocyte immunoglobulin-like receptor subfamily B member 1 D3D4 domain, UNP residues 222-417 9606
25 1EFX 4 D, E NATURAL KILLER CELL RECEPTOR KIR2DL2 EXTRACELLULAR D1 AND D2 DOMAINS 9606
26 2DLI 1 A PROTEIN (MHC CLASS I NK CELL RECEPTOR PRECURSOR) EXTRACELLULAR HLA-CW3 RECOGNITION DOMAIN 9606
27 2DL2 1 A PROTEIN (MHC CLASS I NK CELL RECEPTOR PRECURSOR (P58 NATURAL KILLER CELL RECEPTOR CLONE CL-43)) EXTRACELLULAR HLA-CW3 RECOGNITION DOMAIN 9606
28 1VDG 1 A, B Leukocyte immunoglobulin-like receptor subfamily B member 1 Ligand binding domain (domain 1 and 2) 9606
29 6EWC 4 D, H Leukocyte immunoglobulin-like receptor subfamily B member 1 9606
30 1UFU 1 A Immunoglobulin-like transcript 2 Ligand binding domain (domain1 and 2) 9606
31 4NO0 4 D Leukocyte immunoglobulin-like receptor subfamily B member 1 UNP residues 27-221 9606
32 1P7Q 4 D leukocyte immunoglobulin-like receptor 1 residue 25-221 9606
33 6K60 4 D, H Leukocyte immunoglobulin-like receptor subfamily B member 1 9606