Sequence Similarity Clusters for the Entities in PDB 6IAP

Entity #1 | Chains: A
Natural cytotoxicity triggering receptor 1 protein, length: 182 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 41060
95 % 2 2 41420 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.6
PDBFlex
90 % 2 2 39462
70 % 2 2 35017
50 % 2 2 30366
40 % 22 32 1402
30 % 27 39 1187
Entity #2 | Chains: D
Fab NKp46-4 light chain protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 58318
95 % 1 1 47254
90 % 303 519 4
70 % 1483 2352 2
50 % 1854 2983 2
40 % 1854 2983 2
30 % 3766 6055 1
Entity #3 | Chains: E
Fab NKp46-4 heavy chain protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 83012
95 % 1 1 58186
90 % 1 1 54928
70 % 1792 2883 1
50 % 1887 3028 1
40 % 1887 3028 1
30 % 3767 6055 1
Entity #4 | Chains: H
Fab NKp46-1 heavy chain protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 83014
95 % 2 2 34955 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 1.1
PDBFlex
90 % 2 2 39813
70 % 1793 2883 1
50 % 1888 3028 1
40 % 1888 3028 1
30 % 3768 6055 1
Entity #5 | Chains: L
Fab NKp46-1 light chain protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 44607
95 % 133 227 74 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.9
PDBFlex
90 % 304 519 4
70 % 1484 2352 2
50 % 1855 2983 2
40 % 1855 2983 2
30 % 3769 6055 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 6IAS 1 H Fab NKp46-1 heavy chain 32630
2 6IAP 4 H Fab NKp46-1 heavy chain 32630