Sequence Similarity Clusters for the Entities in PDB 6IAP

Entity #1 | Chains: A
Natural cytotoxicity triggering receptor 1 protein, length: 182 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 55612
95 % 2 2 41779 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.6
PDBFlex
90 % 2 2 39731
70 % 2 2 35224
50 % 2 2 24910
40 % 2 2 20962
30 % 27 39 1200
Entity #2 | Chains: D
Fab NKp46-4 light chain protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 78321
95 % 1 1 47614
90 % 311 530 4
70 % 1494 2367 2
50 % 1866 3002 2
40 % 1866 3002 2
30 % 3790 6093 1
Entity #3 | Chains: E
Fab NKp46-4 heavy chain protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 83564
95 % 1 1 58595
90 % 1 1 55318
70 % 1804 2902 1
50 % 1899 3034 1
40 % 1899 3047 1
30 % 3791 6093 1
Entity #4 | Chains: H
Fab NKp46-1 heavy chain protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 65120
95 % 2 2 39338 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 1.1
PDBFlex
90 % 2 2 33719
70 % 1805 2902 1
50 % 1900 3034 1
40 % 1900 3047 1
30 % 3792 6093 1
Entity #5 | Chains: L
Fab NKp46-1 light chain protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 45050
95 % 9 10 5402 Flexibility: Low
Max RMSD: 7.7, Avg RMSD: 2.3
PDBFlex
90 % 312 530 4
70 % 1495 2367 2
50 % 1867 3002 2
40 % 1867 3002 2
30 % 3793 6093 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 6IAS 2 L Fab NKp46-1 light chain 32630
2 6IAP 5 L Fab NKp46-1 light chain 32630