Sequence Similarity Clusters for the Entities in PDB 6IAP

Entity #1 | Chains: A
Natural cytotoxicity triggering receptor 1 protein, length: 182 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 46792
95 % 2 2 42686 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.6
PDBFlex
90 % 2 2 40627
70 % 2 2 35939
50 % 2 2 31152
40 % 22 33 1393
30 % 27 40 1193
Entity #2 | Chains: D
Fab NKp46-4 light chain protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 72328
95 % 1 1 44710
90 % 465 798 2
70 % 1532 2439 2
50 % 3888 6281 1
40 % 3888 6281 1
30 % 3916 6327 1
Entity #3 | Chains: E
Fab NKp46-4 heavy chain protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 72327
95 % 1 1 59682
90 % 1 1 56231
70 % 1861 3009 1
50 % 3889 6281 1
40 % 3889 6281 1
30 % 3917 6327 1
Entity #4 | Chains: H
Fab NKp46-1 heavy chain protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 72330
95 % 2 2 35967 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 1.1
PDBFlex
90 % 2 2 34381
70 % 1862 3009 1
50 % 3890 6281 1
40 % 3890 6281 1
30 % 3918 6327 1
Entity #5 | Chains: L
Fab NKp46-1 light chain protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 58458
95 % 134 235 67 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.9
PDBFlex
90 % 466 798 2
70 % 1533 2439 2
50 % 3891 6281 1
40 % 3891 6281 1
30 % 3919 6327 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 6IAS 2 L Fab NKp46-1 light chain 32630
2 6IAP 5 L Fab NKp46-1 light chain 32630