Sequence Similarity Clusters for the Entities in PDB 6IAP

Entity #1 | Chains: A
Natural cytotoxicity triggering receptor 1 protein, length: 182 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 46742
95 % 2 2 30727 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.6
PDBFlex
90 % 2 2 32344
70 % 2 2 35895
50 % 2 2 25382
40 % 2 2 23123
30 % 27 40 1195
Entity #2 | Chains: D
Fab NKp46-4 light chain protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 72320
95 % 1 1 44653
90 % 469 805 2
70 % 1528 2435 2
50 % 3880 6273 1
40 % 3880 6273 1
30 % 3908 6319 1
Entity #3 | Chains: E
Fab NKp46-4 heavy chain protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 72319
95 % 1 1 59583
90 % 1 1 56169
70 % 1854 3001 1
50 % 3881 6273 1
40 % 3881 6273 1
30 % 3909 6319 1
Entity #4 | Chains: H
Fab NKp46-1 heavy chain protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 72322
95 % 2 2 42977 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 1.1
PDBFlex
90 % 2 2 38258
70 % 1855 3001 1
50 % 3882 6273 1
40 % 3882 6273 1
30 % 3910 6319 1
Entity #5 | Chains: L
Fab NKp46-1 light chain protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 52635
95 % 132 232 68 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.9
PDBFlex
90 % 470 805 2
70 % 1529 2435 2
50 % 3883 6273 1
40 % 3883 6273 1
30 % 3911 6319 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

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Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5UCB 2 L Fab Light Chain 9606
2 6PZG 1 L NA-80 Fab light chain 9606
3 5UEA 3 B, L Fab Light Chain 9606
4 5TDN 1 A, C anti-HER2 Fab Light Chain 9606
5 3NCJ 1 L Fab15 Mut8 light chain 9606
6 3NA9 1 L Fab15 light chain 9606
7 5UEK 3 L Fab 12E Light Chain 9606
8 3NAA 1 L Fab15 Mut5 light chain 9606
9 6BHZ 2 L, M Trastuzumab Anti-HER2 Fab Light Chain D185A 9606
10 5IT2 2 L light chain 9606
11 4PUB 2 L DX-2930 LIGHT CHAIN 9606
12 6B14 2 L Light chain of Fab BL3-6S97N 10090
13 5VKD 3 L Fab light chain 9606
14 5XHG 1 A, C polypeptide(L) 10090
15 6OTC 3 L sFab H3 light chain 32630
16 6BI2 2 L, M Trastuzumab Anti-HER2 Fab Light Chain 9606
17 5TDO 1 A, C anti-HER2 Fab Light Chain 9606
18 6U8D 3 L Light chain of Fab HCV2 Light chain of Fab HCV2 9606
19 6IAS 2 L Fab NKp46-1 light chain 32630
20 3P0Y 3 L Fab DL11 light chain 9606
21 6ELE 2 B, L fAB light chain 9606
22 3NAC 1 L Fab15 Mut7 light chain 9606
23 5TDP 1 A, C anti-HER2 Fab Light Chain 9606
24 6D0X 2 B 1210 Antibody, light chain 9606
25 1L7I 1 L chimera of Fab2C4: "humanized" murine monoclonal antibody The chimera consists of the human Ig and the original murine sequence light chain (residues 1-214) 9606
26 6O39 1 A Antibody F2.I Fab, Light chain 9606
27 5XKU 2 B HNIgGA6 light chain 9606
28 3SOB 1 L antibody light chain 9606
29 4KQ3 1 L CNTO3186 light chain Fab 9606
30 6ELJ 2 B, L fAB light chain 9606
31 6CBV 2 L Light Chain, Fab fragment 9606
32 5VAG 2 B Light chain of antibody m826 9606
33 6ELL 2 B, L fAB light chain 9606
34 2HFF 1 A, L CB2 Fab, light chain 9606
35 5GGV 1 L light chain 9606
36 5BJZ 3 H, L Synthetic antibody, Fab fragment, Light Chain 9606
37 2R8S 2 L Fab light chain 10090
38 4HKZ 1 A Trastuzumab light chain 9606
39 6DB8 3 L Fab-Light chain 32630
40 6MED 2 B, D, I antibody HEPC3 Light Chain 9606
41 5ITB 2 L anti-RSV F Fab 14N4 Light chain 9606
42 4KMT 1 L light chain O12/KAPPA Fab 9606
43 6CW3 2 B, D antibody light chain 9606
44 6BTJ 2 B, L Light chain of H7.5 Fab 9606
45 6BLI 2 B, E, H, K CB002.5 Fab Light Chain 9606
46 4XTR 3 D, F Antibody Light chain 32630
47 3PGF 3 L SAB Light Chain 9606
48 2QQN 3 L Antibody light chain 9606
49 4OGY 3 L, N DX-2930 LIGHT CHAIN 9606
50 5CZX 3 D, L 20358 Fab light chain 9606
51 6BI0 2 L, M Trastuzumab anti-HER2 Fab Light Chain 9606
52 3GRW 2 L Fab light chain 9606
53 6B3K 2 L Light chain of Fab BL3-6 10090
54 6AYZ 2 C, D Fab Light Chain 9606
55 6O3A 1 A Antibody F7.B Fab, Light chain 9606
56 4LKC 1 A Fab fragment of PCSK9 antibody 9606
57 4KZD 2 L BL3-6 Fab antibody, light chain 10090
58 4XH2 2 B, D, F, I, K, L Fab Light Chain 9606
59 6B6Z 1 A, C Apo Fab Light Chain 9606
60 6EMJ 2 B, L fAb light chain 9606
61 6CNR 1 L Aducanumab light chain 9606
62 3PNW 1 A, D, G, J, M, P, S, V FAB light chain 32630
63 4NRX 3 B, E, L m66 Light Chain 9606
64 6DB9 3 L Fab-Light-Chain 32630
65 3HI6 3 L, Y light chain of Fab fragment of AL-57 against alpha L I domain 9606
66 4ZFG 3 L Fragment antigen binding 5A12 light chain 9606
67 2R0L 1 L antibody light chain 32630
68 5BK1 2 D, L Synthetic antibody, Fab fragment, Light Chain 9606
69 6TYB 4 L NEUTRALIZING ANTIBODY ITS90.03 FAB LIGHT CHAIN 9544
70 5VZ1 1 A, C Apo Antibody Fab Light Chain 9606
71 5OD8 2 B B2 Fab fragment - Light chain 9606
72 6DZN 1 L Antibody ADI-15878, light chain 9606
73 5GGU 2 B, L light chain 9606
74 5W2B 2 L Fab Light Chain 9606
75 6CO3 1 L Fab light chain 9606
76 3BN9 2 C, E E2 Fab Light Chain 9606
77 3L95 1 A, L anti-NRR1 fab fragment light chain 9606
78 4OGX 3 L DX-2930 LIGHT CHAIN 9606
79 4KZE 2 L BL3-6 Fab antibody, light chain 10090
80 4XVU 3 D, F, J, L Antibody light chain 32630
81 3NAB 1 L Fab15 Mut6 light chain 9606
82 4Q9Q 2 L Fab BL3-6, LIGHT CHAIN 10090
83 4WV1 3 A, D Fab light chain 9606
84 5EII 2 B, L Fab Light Chain 9606
85 4UB0 2 L IgG1, light chain 9606
86 1FVD 1 A, C IGG1-KAPPA 4D5 FAB (LIGHT CHAIN) 9606
87 4K94 1 L Fab19 heavy chain 9606
88 4ZD3 2 L 679-14-14E06 Fab fragment light chain 9606
89 5VEB 2 B, L anti-CDH6 Fab light chain 9606
90 6N81 2 D, L A1227 Fab light chain 9606
91 5E08 2 L Fab Light Chain 9606
92 6AZ2 3 E, F Fab Light Chain 9606
93 4EDW 2 L tanezumab Fab light chain 9606
94 1FVE 1 A, C IGG1-KAPPA 4D5 FAB (LIGHT CHAIN) 9606
95 2H9G 1 A, L Fab BdF1, light chain Fab fragment 9606
96 4G7V 2 L fragment antibody light chain 9606
97 5EU7 3 C, D FAB light chain 9606
98 1DFB 1 L IGG1-KAPPA 3D6 FAB (LIGHT CHAIN) 9606
99 4U6V 2 L, M Fab, antigen binding fragment, light chain 9606
100 3FZU 1 D, L immunoglobulin IgG1 Fab, light chain 9606
101 3K2U 4 L Antibody, Fab fragment, Light Chain 9606
102 5VSH 2 B, D, F, L CH1/Clambda Fab light chain 9606
103 2HFG 1 L CB3s Fab light chain (kappa) 9606
104 4JQI 3 L Fab30 light chain 10090
105 6U8C 2 C, L Antibody light chain Fab 9606
106 3SKJ 1 L, M Antibody, light chain 9606
107 3U30 2 B, E Light chain Fab 9606
108 5I15 1 L FAB LIGHT CHAIN 9606
109 2FJF 1 A, C, E, G, J, L, M, O, Q, S, U, W Light Chain of a VEGF binding Antibody 9606
110 6U8K 3 E, G, L Light chain of Fab HCV3 Light chain of Fab HCV3 9606
111 5I1E 1 L FAB LIGHT CHAIN 9606
112 2QQK 3 L Antibody Light Chain 9606
113 4RRP 1 A, B, C, D, E, F Fab antibody, light chain 9606
114 4XGZ 2 B, D, F, I, K, L, N, P, R, T, V, X FAB LIGHT CHAIN 9606
115 1N8Z 1 A Herceptin Fab (antibody) - light chain 10090
116 5BK2 3 D, L sAB Light Chain 9606
117 5BO1 3 L, M Fab light chain 9606
118 6MWN 3 D, L Fab HAVx Light Chain 9606
119 6PI7 2 B, E Uncharacterized protein 9606
120 4XWO 3 D, F, J, L, P, R, V, X Antibody light chain 32630
121 4ZFF 2 B, L Fragment antigen binding (Fab) 5A12 Light chain 9606
122 3HI5 2 L light chain of Fab fragment of AL-57 against alpha L I domain 9606
123 6BGT 2 A Herceptin light chain mutant 9606
124 3DVG 1 A Human IgG1 fab fragment light chain 9606
125 2FGW 1 L H52 FAB (LIGHT CHAIN) 9606
126 2FJG 2 A, L Fab light chain 9606
127 4DKF 3 L, M FAb2 Light Chain 9606
128 6OGX 2 D Fab1 Light Chain 9606
129 1HEZ 1 A, C KAPPA LIGHT CHAIN OF IG 1-214 9606
130 6MEJ 5 L antibody HEPC3 Light Chain 9606
131 3EFD 1 L FabL 10090
132 6IAP 5 L Fab NKp46-1 light chain 32630
133 5K59 4 F, L Fab light chain 9606
134 6PZF 2 E, L NA-63 Fab light chain 9606
135 6O3B 1 A, E Antibody Fab F6, Light chain 9606
136 5F3H 2 B, D, F, H humanized RK35 antibody light chain 10090
137 4G7Y 2 L Fragment antibody light chain 9606
138 4PY8 4 J antibody 3.1 light chain Fab 9606
139 3DVN 1 A, L Human IgG1 fab fragment light chain 9606
140 4NNP 3 L, Y Light chain of antagonistic fab fragment 9606
141 1DEE 1 A, C, E IGM RF 2A2 FAB LIGHT CHAIN 9606
142 2WUC 5 L FAB FRAGMENT FAB40.DELTATRP LIGHT CHAIN 9606
143 4PY7 2 B, J antibody 3.1 light chain Fab 9606
144 4K8R 3 C Fab1, light chain 9606
145 1TZI 1 A Fab YADS2 Light Chain 10090
146 4YK4 1 B, Y 641 I-9 VLCL antibody 9606
147 6MEI 3 L antibody HEPC3 Light Chain 9606
148 3R1G 3 L FAB of YW412.8.31 antibody light chain 9606
149 2QQL 3 L Antibody Light Chain 9606
150 4MXV 2 E, L, X anti-Lymphotoxin alpha antibody light chain Fab 9606
151 3WD5 2 L Adalimumab Light Chain 9606
152 2WUB 4 L, Q FAB FRAGMENT FAB40.DELTATRP LIGHT CHAIN 9606
153 6R2S 1 A Antibody DB9 light chain 9606
154 6CW2 4 B antibody light chain 9606
155 2FJH 2 A, L Fab fragment light chain 9606
156 4K9E 1 L light chain 10090
157 3P0V 1 L, M Fab DL11 light chain 9606
158 6OEL 5 L engineered Fab light chain 9606
159 5VIG 2 B, L Fab light chain 9606
160 3HMX 3 L USTEKINUMAB FAB LIGHT CHAIN 9606
161 6I04 3 D, L Fab light chain 9606
162 5VYF 1 A, L Antibody light chain 10090
163 4I18 1 B, L antibody light chain Fab 10090
164 4Q9R 2 L Fab BL3-6, LIGHT CHAIN 10090
165 3IVK 1 B, L Fab light chain man 10090
166 5I19 1 L FAB LIGHT CHAIN 9606
167 6OKN 2 B, D Fab 1A7 light chain 9606
168 5X8L 2 K, L, M, N, O atezolizumab light chain 9606
169 1RZI 1 A, C, E, G, I, K, M, O Fab 47e light chain 9606
170 6APB 3 L ADI-14359 Fab Light Chain 9606
171 6D01 2 B, D, F, H 1210 Antibody, Light chain 9606
172 5CZV 3 L Fab 20350 light chain 9606
173 4P59 3 L MOR09825 Fab fragment light chain 9606
174 5XXY 2 L light chain of atezolizumab fab 9606
175 5CJO 3 L FAB light chain 10090
176 3N85 2 L Fab37 Light Chain 9606
177 3G6J 3 E, G Fab light chain 9606
178 5GJT 3 L light chain of human neutralizing antibody 3E1 light chain of neutralizing antibody 3E1 9606
179 6MH2 1 A, C Herceptin Fab arm light chain 9606
180 3HMW 1 L USTEKINUMAB FAB LIGHT CHAIN 9606
181 5O4G 2 A MF3958 FAB light chain 9606
182 4DKE 3 L, M FAb1.1 Light Chain 9606
183 5VIC 2 L Fab light chain 9606
184 6MEK 3 D, L HEPC3 Light Chain 9606
185 5GJS 3 L light chain of human neutralizing antibody 3E1 9606
186 4NRY 1 B, L m66 Heavy Chain 9606
187 5XHF 1 A, C polypeptide (L chain) 10090
188 5VL7 4 L Fab33 light chain 9606
189 1S78 2 C, E Pertuzumab Fab light chain 10090
190 4NYL 1 B, D, F, L Adalimumab Light Chain 9606
191 5O4O 1 A MF3178 FAB light chain 9606
192 5D1Q 1 A D2-06 Light Chain 9606
193 4IOF 3 D, F Fab-bound IDE, light chain 10090
194 4M1C 3 D, F Fab-bound IDE, light chain 9606
195 3ULV 2 L Fab15 light chain 9606
196 4MXW 5 L, V anti-Lymphotoxin alpha antibody light chain Fab 9606
197 5UOE 3 L, N, Q, T, W FAB light chain 9606
198 6D11 2 B, D 1450 Antibody, Light chain 9606
199 5CWS 1 A, G sAB-158 Fab Light Chain 9606
200 2R0K 2 L antibody light chain of Fab58 9606
201 5C8J 2 B, D, F, H Antibody fragment, light chain OBTAINED BY PHAGE DISPLAY FROM A LIBRARY OF HUMAN IGG. ANTIBODY FRAGMENT; THE CDRS ARE COMPLETELY SYNTHETIC 9606
202 4G80 3 B, D, F, H fragment antibody light chain 9606
203 3P11 2 L Fab DL11 light chain 9606
204 3ULU 2 L Fab15 light chain 9606
205 5W1K 1 A, F, K, S CR1-28 Fab light chain 9606
206 4XI5 3 C Fab-94 light chain 9606
207 5WOB 4 J, L, N, P, R, T, V, X IDE-bound Fab light chain 60742
208 2QR0 1 A, E, G, K, M, Q, S, W Fab-Fragment Light Chain 9606
209 5J3D 2 B, D, L 14N4 light chain 9606
210 3EFF 1 A, C FAB 10090
211 3PJS 1 A, C FAB light chain 10090
212 5O7P 2 A MF3178 FAB light chain 9606
213 5DWU 4 L Fab - Light Chain 9606
214 6EA7 4 L, N, R ADI-15878 Fab Light Chain 9606
215 6EA5 4 L, N, R ADI-15878 Fab Light Chain 9606
216 4XMN 6 L Antibody 87 light chain 32630
217 4XMM 8 L Antibody 57 light chain 9606
218 6UKJ 3 L Fab Light Chain 9606
219 6U02 2 C, F, I, L Fab-63 Light Chain 9606
220 6PZZ 2 E, G, J, L NA-80 fragment antibody light chain 9606
221 6PWC 5 L Fab30 light chain 32630
222 6OT0 5 L Fab light chain 10090
223 6OGE 2 B Pertuzumab FAB LIGHT CHAIN 9606
224 6OGE 4 D Trastuzumab FAB LIGHT CHAIN 9606
225 6NI2 4 L Fab30 Light Chain 32630
226 6MLM 4 G, I, L Light chain Fv of H7.5 Fab 9606
227 6E1K 2 C, E cat06 light chain 9606
228 6CMO 5 L Fab light chain 32630
229 6BF7 3 D, F Fab H11-E light chain 10090
230 6BF9 3 D, F Fab H11-E light chain 10090
231 6B7Z 3 D, F FAB H11 light chain 10090
232 6B70 3 D, F FAB H11-E light chain 10090