Sequence Similarity Clusters for the Entities in PDB 6IAP

Entity #1 | Chains: A
Natural cytotoxicity triggering receptor 1 protein, length: 182 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 47597
95 % 2 2 34378 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.6
PDBFlex
90 % 2 2 32903
70 % 2 2 29428
50 % 2 2 31532
40 % 2 2 23437
30 % 27 40 1224
Entity #2 | Chains: D
Fab NKp46-4 light chain protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 73498
95 % 1 1 60567
90 % 335 573 4
70 % 1554 2488 2
50 % 3948 6427 1
40 % 3949 6428 1
30 % 3978 6475 1
Entity #3 | Chains: E
Fab NKp46-4 heavy chain protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 73497
95 % 1 1 60566
90 % 1 1 57049
70 % 1883 3058 1
50 % 3949 6427 1
40 % 3950 6428 1
30 % 3979 6475 1
Entity #4 | Chains: H
Fab NKp46-1 heavy chain protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 73500
95 % 2 2 40864 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 1.1
PDBFlex
90 % 2 2 30628
70 % 1884 3058 1
50 % 3950 6427 1
40 % 3951 6428 1
30 % 3980 6475 1
Entity #5 | Chains: L
Fab NKp46-1 light chain protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 47598
95 % 9 10 5769 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.9
PDBFlex
90 % 336 573 4
70 % 1555 2488 2
50 % 3951 6427 1
40 % 3952 6428 1
30 % 3981 6475 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 6IAS 2 L Fab NKp46-1 light chain 32630
2 6ELE 2 B, L fAB light chain 9606
3 6ELJ 2 B, L fAB light chain 9606
4 6ELL 2 B, L fAB light chain 9606
5 6EMJ 2 B, L fAb light chain 9606
6 4EDW 2 L tanezumab Fab light chain 9606
7 2FGW 1 L H52 FAB (LIGHT CHAIN) 9606
8 6OGX 2 D Fab1 Light Chain 9606
9 6IAP 5 L Fab NKp46-1 light chain 32630
10 6OKN 2 B, D Fab 1A7 light chain 9606