Sequence Similarity Clusters for the Entities in PDB 6IAP

Entity #1 | Chains: A
Natural cytotoxicity triggering receptor 1 protein, length: 182 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 46427
95 % 2 2 42350 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.6
PDBFlex
90 % 2 2 40341
70 % 2 2 35682
50 % 2 2 30962
40 % 2 2 28086
30 % 27 40 1186
Entity #2 | Chains: D
Fab NKp46-4 light chain protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 71806
95 % 1 1 59233
90 % 465 797 2
70 % 1518 2418 2
50 % 1899 3071 2
40 % 1899 3071 2
30 % 3861 6236 1
Entity #3 | Chains: E
Fab NKp46-4 heavy chain protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 71805
95 % 1 1 59232
90 % 1 1 55850
70 % 1836 2969 1
50 % 1937 3121 1
40 % 1937 3121 1
30 % 3862 6236 1
Entity #4 | Chains: H
Fab NKp46-1 heavy chain protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 71808
95 % 2 2 31108 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 1.1
PDBFlex
90 % 2 2 38089
70 % 1837 2969 1
50 % 1938 3121 1
40 % 1938 3121 1
30 % 3863 6236 1
Entity #5 | Chains: L
Fab NKp46-1 light chain protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 46428
95 % 9 10 5403 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.9
PDBFlex
90 % 466 797 2
70 % 1519 2418 2
50 % 1900 3071 2
40 % 1900 3071 2
30 % 3864 6236 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 6IAS 2 L Fab NKp46-1 light chain 32630
2 6ELE 2 B, L fAB light chain 9606
3 6ELJ 2 B, L fAB light chain 9606
4 6ELL 2 B, L fAB light chain 9606
5 6EMJ 2 B, L fAb light chain 9606
6 4EDW 2 L tanezumab Fab light chain 9606
7 2FGW 1 L H52 FAB (LIGHT CHAIN) 9606
8 6OGX 2 D Fab1 Light Chain 9606
9 6IAP 5 L Fab NKp46-1 light chain 32630
10 6OKN 2 B, D Fab 1A7 light chain 9606