Sequence Similarity Clusters for the Entities in PDB 6ICZ

Entity #1 | Chains: v
Protein mago nashi homolog 2 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 10 4766
95 % 8 10 5587
90 % 12 14 3823
70 % 12 14 3782
50 % 12 14 3732
40 % 12 14 3716
30 % 12 14 3626
Entity #10 | Chains: G
pre-mRNA rna, length: 273 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #11 | Chains: H
U2snRNA rna, length: 188 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #12 | Chains: J
Crooked neck-like protein 1 protein, length: 848 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 12 6275
95 % 2 12 7334
90 % 2 12 7341
70 % 2 12 7188
50 % 2 12 6808
40 % 2 12 6574
30 % 2 12 6224
Entity #13 | Chains: L
Cell division cycle 5-like protein protein, length: 802 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 12 7146
95 % 2 12 7684
90 % 2 12 7668
70 % 2 12 7483
50 % 2 12 7058
40 % 2 12 6822
30 % 2 12 6409
Entity #14 | Chains: M
Pre-mRNA-splicing factor SYF2 protein, length: 243 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 6 16887
95 % 1 6 14898
90 % 1 6 14850
70 % 1 6 14940
50 % 1 6 12587
40 % 1 6 11884
30 % 1 6 10906
Entity #15 | Chains: N
Protein BUD31 homolog protein, length: 144 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 11 7660
95 % 2 11 8261
90 % 2 11 8205
70 % 2 11 7980
50 % 6 29 2678
40 % 6 29 2705
30 % 6 29 2692
Entity #16 | Chains: O
Pre-mRNA-splicing factor RBM22 protein, length: 420 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 10 8222
95 % 1 10 8852
90 % 1 10 8803
70 % 1 10 8548
50 % 1 10 7976
40 % 1 10 7676
30 % 1 10 7193
Entity #17 | Chains: P
Spliceosome-associated protein CWC15 homolog protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 12 6541
95 % 2 12 7760
90 % 2 12 7737
70 % 2 12 7547
50 % 2 12 7106
40 % 2 12 6862
30 % 2 12 6446
Entity #18 | Chains: R
SNW domain-containing protein 1 protein, length: 536 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 8 9777
95 % 1 11 7923
90 % 1 11 7873
70 % 1 11 7660
50 % 1 11 7197
40 % 1 12 6218
30 % 1 12 5882
Entity #19 | Chains: S
Peptidyl-prolyl cis-trans isomerase-like 1 protein, length: 166 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 13 5832
95 % 3 12 6641
90 % 3 13 6650
70 % 3 13 6567
50 % 3 13 6273
40 % 3 13 6090
30 % 3 13 5806
Entity #2 | Chains: w
RNA-binding protein 8A protein, length: 174 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 32029
95 % 1 3 27816
90 % 1 3 28983
70 % 1 3 26148
50 % 4 6 10466
40 % 4 6 9242
30 % 4 6 8582
Entity #20 | Chains: T
Pleiotropic regulator 1 protein, length: 514 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 10 8432
95 % 1 11 7975
90 % 1 11 7923
70 % 1 11 7718
50 % 1 11 7258
40 % 1 11 6998
30 % 1 11 6564
Entity #21 | Chains: U
Serine/arginine repetitive matrix protein 2 protein, length: 2752 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 8 12652
95 % 1 8 11178
90 % 1 8 11095
70 % 1 8 11050
50 % 1 8 10718
40 % 1 8 10091
30 % 1 8 9343
Entity #22 | Chains: V
Pre-mRNA-splicing factor CWC22 homolog protein, length: 908 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 9 8928
95 % 2 9 10078
90 % 2 9 9459
70 % 2 9 9176
50 % 2 9 8779
40 % 2 9 8170
30 % 2 9 8040
Entity #23 | Chains: W
Pre-mRNA-processing factor 17 protein, length: 579 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 10 8259
95 % 1 10 9343
90 % 1 10 9256
70 % 1 10 8993
50 % 1 10 7946
40 % 2 12 6453
30 % 2 12 6119
Entity #24 | Chains: X
PRKR-interacting protein 1 protein, length: 184 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 47283
95 % 1 2 42996
90 % 1 2 40918
70 % 1 2 36064
50 % 1 2 31286
40 % 1 2 28350
30 % 1 2 25088
Entity #25 | Chains: Z
Pre-mRNA-splicing factor SLU7 protein, length: 586 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 32032
95 % 2 3 27818
90 % 2 3 26837
70 % 2 3 24339
50 % 2 3 21375
40 % 2 3 19549
30 % 2 3 17521
Entity #26 | Chains: I
Pre-mRNA-splicing factor SYF1 protein, length: 855 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 10 8117
95 % 2 10 9080
90 % 2 10 9014
70 % 2 10 8058
50 % 2 10 8164
40 % 2 10 7845
30 % 2 10 7343
Entity #27 | Chains: y
Peptidyl-prolyl cis-trans isomerase E protein, length: 301 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 8 11031
95 % 1 8 12229
90 % 1 8 12068
70 % 1 8 11499
50 % 1 8 10531
40 % 1 8 9926
30 % 1 8 9187
Entity #28 | Chains: Q
RNA helicase aquarius protein, length: 1485 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 11 7397
95 % 3 11 7897
90 % 3 11 7911
70 % 3 11 7915
50 % 3 11 7441
40 % 3 11 6942
30 % 3 11 6730
Entity #29 | Chains: a,h
Small nuclear ribonucleoprotein Sm D3 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 19 903
95 % 6 20 1123
90 % 6 20 1162
70 % 6 20 1187
50 % 6 20 1231
40 % 6 20 1272
30 % 6 8 1313
Entity #3 | Chains: u
Eukaryotic initiation factor 4A-III protein, length: 411 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 12 3555
95 % 11 14 3717
90 % 11 14 3790
70 % 14 17 2683
50 % 17 20 2211
40 % 28 31 1587
30 % 36 39 1278
Entity #30 | Chains: b,i
Small nuclear ribonucleoprotein-associated protein protein, length: 231 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 17 1345
95 % 4 17 1782
90 % 4 17 1802
70 % 4 17 1845
50 % 4 17 1916
40 % 4 17 1930
30 % 4 17 1982
Entity #31 | Chains: c,j
Small nuclear ribonucleoprotein Sm D1 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 23 570
95 % 9 23 777
90 % 9 23 803
70 % 9 24 815
50 % 9 41 850
40 % 9 41 883
30 % 9 24 919
Entity #32 | Chains: d,k
Small nuclear ribonucleoprotein Sm D2 protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 28 500
95 % 16 30 650
90 % 16 30 679
70 % 16 30 708
50 % 23 58 459
40 % 23 58 490
30 % 23 58 509
Entity #33 | Chains: f,m
Small nuclear ribonucleoprotein F protein, length: 86 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 80 518
95 % 14 28 701
90 % 14 80 734
70 % 14 28 775
50 % 14 80 806
40 % 14 28 838
30 % 14 28 876
Entity #34 | Chains: e,l
Small nuclear ribonucleoprotein E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 29 496
95 % 15 29 669
90 % 15 29 700
70 % 15 29 728
50 % 15 29 768
40 % 15 29 801
30 % 15 29 842
Entity #35 | Chains: g,n
Small nuclear ribonucleoprotein G protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 29 491
95 % 15 29 668
90 % 15 29 694
70 % 15 29 719
50 % 22 57 468
40 % 22 58 488
30 % 22 58 507
Entity #36 | Chains: o
U2 small nuclear ribonucleoprotein A' protein, length: 255 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 11 7661
95 % 2 14 6272
90 % 2 14 6288
70 % 2 14 6032
50 % 2 14 5786
40 % 2 14 5639
30 % 2 14 5386
Entity #37 | Chains: p
U2 small nuclear ribonucleoprotein B'' protein, length: 225 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 14 5385
95 % 2 14 6074
90 % 2 14 6107
70 % 2 14 6020
50 % 2 14 5771
40 % 2 14 5629
30 % 2 14 5375
Entity #38 | Chains: Y
ATP-dependent RNA helicase DHX8 protein, length: 1220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 45247
95 % 2 4 19669
90 % 2 4 19260
70 % 2 4 22048
50 % 2 4 19458
40 % 2 4 17849
30 % 2 4 16030
Entity #39 | Chains: K
Pre-mRNA-splicing factor SPF27 protein, length: 225 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 10 7987
95 % 2 10 8853
90 % 2 10 8804
70 % 2 10 8549
50 % 2 10 7977
40 % 2 10 7677
30 % 2 10 7194
Entity #4 | Chains: x
Protein CASC3 protein, length: 703 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 32030
95 % 1 3 27817
90 % 1 3 26836
70 % 1 3 24338
50 % 1 3 22904
40 % 1 3 20954
30 % 1 3 18752
Entity #40 | Chains: q,r,s,t
Pre-mRNA-processing factor 19 protein, length: 504 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 25 1307
95 % 2 10 1716
90 % 2 10 1749
70 % 2 10 1786
50 % 2 10 1836
40 % 2 10 1881
30 % 2 11 1736
Entity #41 | Chains: D
U5 small nuclear ribonucleoprotein 200 kDa helicase protein, length: 2136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 13 5752
95 % 3 13 6444
90 % 3 13 6604
70 % 3 13 6392
50 % 3 13 6098
40 % 5 25 2999
30 % 5 25 2977
Entity #5 | Chains: A
Pre-mRNA-processing-splicing factor 8 protein, length: 2335 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 18 3753
95 % 4 18 4343
90 % 4 18 4398
70 % 4 19 4215
50 % 8 41 1773
40 % 8 41 1823
30 % 8 41 1849
Entity #6 | Chains: B
U5snRNA rna, length: 117 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #7 | Chains: C
116 kDa U5 small nuclear ribonucleoprotein component protein, length: 972 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 15 4770
95 % 4 18 4574
90 % 4 18 4642
70 % 4 18 4617
50 % 4 19 4218
40 % 4 19 4166
30 % 9 42 1795
Entity #8 | Chains: E
U5 small nuclear ribonucleoprotein 40 kDa protein protein, length: 357 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 16 4485
95 % 3 16 5160
90 % 3 16 5220
70 % 3 16 5169
50 % 3 16 5015
40 % 3 16 4883
30 % 3 16 4715
Entity #9 | Chains: F
U6snRNA rna, length: 107 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures