Sequence Similarity Clusters for the Entities in PDB 6ILL

Entity #1 | Chains: A
Capsid protein VP1 protein, length: 273 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 6 16801
95 % 1 6 14986
90 % 1 6 14830
70 % 8 16 5065
50 % 11 29 868
40 % 106 222 197
30 % 106 222 205
Entity #2 | Chains: B
Capsid protein VP2 protein, length: 252 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 13367
95 % 1 7 12917
90 % 1 7 12738
70 % 11 31 825
50 % 99 222 197
40 % 99 222 209
30 % 104 235 214
Entity #3 | Chains: C
Capsid protein VP3 protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 6 14838
95 % 1 7 13022
90 % 1 7 12769
70 % 11 31 824
50 % 8 23 953
40 % 108 236 189
30 % 129 278 128
Entity #4 | Chains: D
Capsid protein VP4 protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 54108
95 % 3 8 10164
90 % 10 20 4016
70 % 42 96 650
50 % 83 154 419
40 % 83 154 434
30 % 83 154 457

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

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Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4Q4W 1 1 Coxsackievirus capsid protein VP1 138950
2 4Q4X 1 1 Coxsackievirus capsid protein VP1 138950
3 4Q4Y 1 1 Coxsackievirus capsid protein VP1 138950
4 6T4C 1 A VP1 1330520 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
5 6T48 1 A VP1 1330520 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
6 5C8C 1 A VP1 138948
7 1AYM 1 1 HUMAN RHINOVIRUS 16 COAT PROTEIN 169066
8 4WM8 1 A VP1 138951
9 5BNP 1 A Capsid protein VP1 UNP residues 565-861 138951
10 3VBH 1 A Genome Polyprotein, capsid protein VP1 138948
11 1PVC 2 1 POLIOVIRUS TYPE 3, SABIN STRAIN P3/SABIN P3/LEON/12A(1)B 138950
12 5BNO 1 A Capsid protein VP1 UNP residues 565-861 138951
13 1FPN 1 1 COAT PROTEIN VP1 147711
14 5OSN 1 A Capsid protein 12064
15 1ND2 1 A coat protein VP1 147711
16 4WM7 1 A VP1 138951
17 1HXS 1 1 GENOME POLYPROTEIN, COAT PROTEIN VP1 RESIDUES 579-880 138950
18 5BNN 1 A Capsid protein VP1 UNP residues 565-861 138951
19 1NCQ 1 A COAT PROTEIN VP1 147712
20 1D4M 1 1 PROTEIN (COXSACKIEVIRUS A9) VP1 138949
21 4RHV 1 1 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1) 147712
22 1EAH 1 1 POLIOVIRUS TYPE 2 COAT PROTEINS VP1 TO VP4 138950
23 4Q4V 1 1 Coxsackievirus capsid protein VP1 138950
24 1K5M 1 A COAT PROTEIN VP1 (P1D) 147712
25 1QJU 1 1 PROTEIN VP1 RESIDUES 569-853 147711
26 3VBF 1 A Genome Polyprotein, capsid protein VP1 STRAIN FUYANG, ANHUI. P.R.C/17.08/1 138948
27 2PLV 1 1 HUMAN POLIOVIRUS TYPE 1 (SUBUNIT VP1) 138950
28 4PDW 1 A Genome polyprotein resdiues 568-856 147712 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
29 4CDQ 1 A VP1 138948
30 3ZFE 1 A VP1 VIRION OF HUMAN ENTEROVIRUS 71 138948
31 1QJX 1 1 PROTEIN VP1 RESIDUES 569-853 147711
32 1QJY 1 1 PROTEIN VP1 RESIDUES 569-853 147711
33 1NCR 1 A coat protein VP1 147711
34 3VBO 1 A Genome Polyprotein, capsid protein VP1 138948
35 1AYN 1 1 HUMAN RHINOVIRUS 16 COAT PROTEIN 169066
36 1C8M 1 1 HUMAN RHINOVIRUS 16 COAT PROTEIN RESIDUES 569-853 147711
37 1AR7 2 1 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
38 1ND3 1 A coat protein VP1 147711
39 1BEV 1 1 BOVINE ENTEROVIRUS COAT PROTEINS VP1 TO VP4 12064
40 4JGY 1 A Polyprotein, capsid protein VP1 STRAIN NINGBO.CHN/028-2/2009 138948
41 1AL2 2 1 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
42 1PO1 2 1 POLIOVIRUS TYPE 1 MAHONEY 138950
43 1AR9 2 1 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
44 4RQP 1 A, E, I, M, Q Capsid protein VP1 138948
45 5C4W 1 A VP1 138948
46 1H8T 1 A ECHOVIRUS 11 COAT PROTEIN VP1 138949
47 1PO2 2 1 POLIOVIRUS TYPE 1 MAHONEY 138950
48 1ASJ 2 1 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
49 1Z7S 1 1 Human COXSACKIEVIRUS A21 Viral Protein 1 138950
50 1OOP 1 A Coat protein VP1 138949
51 4CDX 1 A VP1 138948
52 4RR3 1 A, E, I, M, Q Capsid protein VP1 138948
53 3VDD 1 A Protein VP1 UNP residues 568-850 147711
54 1NA1 1 A Coat protein VP1 147712
55 5C9A 1 A VP1 138948
56 4CDU 1 A VP1 138948
57 1VBB 2 1 POLIOVIRUS TYPE 3 THE NUMBERING OF THE VP1 RESIDUES HAS BEEN ALTERED TO FACILITATE COMPARISON WITH THE STRUCTURE OF THE MAHONEY STRAIN OF TYPE 1 POLIOVIRUS (PDB ENTRY 2PLV). MAHONEY HAS A TWO RESIDUE INSERTION, RELATIVE TO P3/SABIN, LOCATED IN THE DISORDERED N-TERMINUS OF VP1. THUS THE RESIDUES NUMBERED 24 - 302 IN THIS ENTRY ARE ACTUALLY RESIDUES 22 - 300. 138950
58 1POV 2 1 POLIOVIRUS NATIVE EMPTY CAPSID (TYPE 1) 138950
59 1AR6 2 1 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
60 1AR8 2 1 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
61 4N53 1 A Capsid protein VP1 138948
62 4CDW 1 A VP1 138948
63 4CEY 1 A VP1 138948
64 1VBC 2 1 POLIOVIRUS TYPE 3 THE NUMBERING OF THE VP1 RESIDUES HAS BEEN ALTERED TO FACILITATE COMPARISON WITH THE STRUCTURE OF THE MAHONEY STRAIN OF TYPE 1 POLIOVIRUS (PDB ENTRY 2PLV). MAHONEY HAS A TWO RESIDUE INSERTION, RELATIVE TO P3/SABIN, LOCATED IN THE DISORDERED N-TERMINUS OF VP1. THUS THE RESIDUES NUMBERED 24 - 302 IN THIS ENTRY ARE ACTUALLY RESIDUES 22 - 300. 138950
65 3TN9 1 1 Protein VP1 147711
66 3ZFG 1 A VP1 VIRION OF HUMAN ENTEROVIRUS 71 138948
67 1VBE 2 1 POLIOVIRUS TYPE 3 THE NUMBERING OF THE VP1 RESIDUES HAS BEEN ALTERED TO FACILITATE COMPARISON WITH THE STRUCTURE OF THE MAHONEY STRAIN OF TYPE 1 POLIOVIRUS (PDB ENTRY 2PLV). MAHONEY HAS A TWO RESIDUE INSERTION, RELATIVE TO P3/SABIN, LOCATED IN THE DISORDERED N-TERMINUS OF VP1. THUS THE RESIDUES NUMBERED 24 - 302 IN THIS ENTRY ARE ACTUALLY RESIDUES 22 - 300. 138950
68 4CEW 1 A VP1 138948
69 3VBS 1 A Genome Polyprotein, capsid protein VP1 138948
70 5ABJ 1 A VP1 UNP RESIDUES 566-862 138948
71 1VBD 2 1 POLIOVIRUS TYPE 1 MAHONEY P1/MAHONEY 138950
72 3ZFF 1 A VP1 138948
73 1RHI 1 1 HUMAN RHINOVIRUS 3 COAT PROTEIN 147712
74 1VBA 2 1 POLIOVIRUS TYPE 3 THE NUMBERING OF THE VP1 RESIDUES HAS BEEN ALTERED TO FACILITATE COMPARISON WITH THE STRUCTURE OF THE MAHONEY STRAIN OF TYPE 1 POLIOVIRUS (PDB ENTRY 2PLV). MAHONEY HAS A TWO RESIDUE INSERTION, RELATIVE TO P3/SABIN, LOCATED IN THE DISORDERED N-TERMINUS OF VP1. THUS THE RESIDUES NUMBERED 24 - 302 IN THIS ENTRY ARE ACTUALLY RESIDUES 22 - 300. 138950
75 4JGZ 1 A Polyprotein, capsid protein VP1 STRAIN NINGBO.CHN/028-2/2009 138948
76 1MQT 1 A Polyprotein SVDV COAT PROTEIN VP1 138949
77 1RVF 1 1 HUMAN RHINOVIRUS 14 COAT PROTEIN 147712
78 4GB3 1 1 coat protein 1 UNP residues 571-851 138949
79 2X5I 1 A VP1 138949
80 1PIV 2 1 POLIOVIRUS TYPE 3 (SUBUNIT VP1) 138950
81 1COV 1 1 COXSACKIEVIRUS COAT PROTEIN 138949
82 1R1A 1 1 HUMAN RHINOVIRUS 1A COAT PROTEIN (SUBUNIT VP1) 147711
83 1EV1 1 1 ECHOVIRUS 1 VP1, VP2, VP3, VP4 138949
84 4N43 1 A Capsid protein VP1 EV71 capsid protein VP1 138948
85 4YVS 1 A, D, G, J, M Capsid protein VP1 138948
86 1V9U 1 1 Coat protein VP1 147711
87 4RS5 3 A, D, G, J, M Capsid protein VP1 138948
88 4GMP 2 1 capsid protein VP1 UNP residues 566-862 138948
89 4AED 1 A VP1 138948
90 4YVW 1 A, D, E, J, M Capsid protein VP1 138948
91 3DPR 1 A Protein VP1 147711
92 4L3B 1 A Protein VP1 UNP residues 568-856 147711
93 6UH1 1 A VP1 138948
94 6UH6 1 A VP1 138948
95 6UH7 1 A VP1 138948
96 6SNW 1 A Capsid protein VP1 138948 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
97 6SNB 1 A Capsid protein VP1 138948 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
98 6SMG 1 A Capsid protein VP1 138948 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
99 6SK5 3 A Rhinovirus B5 VP1 147712
100 6SK6 3 A Rhinovirus B5 VP1 147712
101 6SK7 1 A VP1 capsid protein 147711 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
102 6RJF 1 1 VP1 138949
103 6O06 1 A VP1 UNP residues 570-850 138949
104 6MZI 1 A viral protein 1 UNP residues 565-861 138951
105 6I2K 1 A Polyprotein 138948
106 6ILL 1 A Capsid protein VP1 138949
107 6ILM 1 A Capsid protein VP1 138949
108 6ILN 1 A Capsid protein VP1 138949
109 6ILP 1 A Capsid protein VP1 138949
110 6ILJ 1 A Capsid protein VP1 138949
111 6ILK 1 A Capsid protein VP1 138949
112 6IIO 1 A VP1 138948
113 6IIJ 1 A VP1 138948
114 6AKS 1 A VP1 138948
115 6AKT 1 A VP1 138948
116 6AKU 1 A VP1 138948
117 6HHT 1 A1, A2, D1, D2, G1, G2, J1, J2, M1, M2, P1, P2, S1, S2, V1, V2, Y2, b2, e2, h2, k2, n2, q2, t2, w2 Echovirus 18 capsid protein 1 138949
118 6AJ7 3 A Capsid protein VP1 138951
119 6AJ9 5 A Capsid protein VP1 138951
120 6AJ2 1 A Capsid protein VP1 138951 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
121 6AJ3 1 A Capsid protein VP1 138951 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
122 6AJ0 1 A Viral protein 1 138951
123 6HBG 1 A Echovirus 18 viral protein 1 138949 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
124 6HBH 1 A Echovirus 18 capsid protein 1 138949
125 6HBJ 1 A Viral protein 1 138949 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
126 6HBK 1 A, D, G, J, M, P, S, V, Y, b, e Echovirus 18 capsid protein 1 138949
127 6HBL 1 A, D, G, J, M, P, S, V, Y, b, e, h, k, n, q Echovirus 18 capsid protein 1 138949
128 6ACY 1 A VP1 138948
129 6ACZ 1 A VP1 138948
130 6AD0 3 A VP1 138948
131 6AD1 1 A VP1 138948
132 6ACU 1 A VP1 138948
133 6ACW 1 A VP1 138948
134 6GZV 1 A Capsid protein VP1 138949 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
135 6DIZ 1 A VP1 138948
136 5ZUD 1 A Capsid protein VP1 138948
137 5ZUF 1 A Capsid protein VP1 138948
138 6CV1 1 A viral protein 1 UNP residues 565-861 138951
139 6CV2 1 A viral protein 1 UNP residues 565-861 138951
140 6CV3 1 A viral protein 1 UNP residues 565-861 138951
141 6CV4 1 A viral protein 1 UNP residues 565-861 138951
142 6CV5 1 A viral protein 1 UNP residues 565-861 138951
143 6CVB 1 A viral protein 1 UNP residues 565-861 138951
144 6CSA 1 A viral protein 1 UNP residues 565-861 138951
145 6CSG 1 A viral protein 1 UNP residues 565-861 138951
146 6CSH 1 A viral protein 1 UNP residues 565-861 138951
147 6CRP 1 A viral protein 1 UNP residues 565-861 138951
148 6CRR 1 A viral protein 1 UNP residues 565-861 138951
149 6CRS 1 A viral protein 1 UNP residues 565-861 138951
150 6CRU 1 A viral protein 1 UNP residues 565-861 138951
151 6CS3 1 A viral protein 1 UNP residues 565-861 138951
152 6CS4 1 A viral protein 1 UNP residues 565-861 138951
153 6CS5 1 A viral protein 1 UNP residues 565-861 138951
154 6CS6 1 A viral protein 1 UNP residues 565-861 138951
155 5YHQ 1 A Capsid protein VP1 138948
156 6EIT 1 1 VP1 138950
157 5XS4 1 A Genome polyprotein UNP residues 566-870 138948
158 5XS5 1 A Genome polyprotein UNP residue 566-870 138948
159 5XS7 3 A Genome polyprotein UNP residues 566-870 138948
160 5W3L 1 A viral protein 1 UNP residues 568-856 147712
161 5W3M 3 A viral protein 1 UNP residues 568-856 147712
162 5W3O 3 A viral protein 1 UNP residues 568-856 147712
163 5W3E 3 A viral protein 1 UNP residues 568-856 147712
164 5O5P 1 1 Capsid proteins, VP1 138950
165 5O5B 1 1 Capsid proteins 138950
166 5TSK 1 A coxsackievirus A16 empty procapsid VP1 subunit 138948
167 3JD7 1 1 Capsid protein VP1 UNP residues 571-851 138949
168 3JBC 1 1 Capsid protein VP1 UNP residues 580-881 138950
169 3JBD 1 1 Capsid protein VP1 UNP residues 580-881 138950
170 3JBE 1 1 Capsid protein VP1 UNP residues 580-881 138950
171 3JBF 1 1 Capsid protein VP1 UNP residues 580-881 138950
172 3JBG 1 1 Capsid protein VP1 UNP residues 580-881 138950
173 3J9F 1 1 Protein VP1 UNP residues 580-881 138950
174 3J91 2 1 VP1 UNP residues 566-682 138948
175 3J8F 1 1 Capsid protein VP1 UNP residues 580-881 138950
176 4C0U 1 A VP1 138948
177 4C0Y 1 A VP1 138948
178 4C10 3 A VP1 138948
179 3J48 1 1 Protein VP1 UNP residues 580-881 138950
180 3J3O 4 1 Protein VP1 UNP residues 580-881 138950
181 3J3P 3 1 Protein VP1 UNP residues 580-881 138950
182 3IYP 1 A Capsid protein 138949
183 3EPC 2 1 Protein VP1 138950
184 3EPD 3 1 protein VP1 138950
185 3EPF 2 1 Protein VP1 138950
186 2C8I 1 A ECHOVIRUS 11 COAT PROTEIN VP1 138949
187 1Z7Z 1 1 human coxsackievirus A21 Viral Protein 1 residues 1073-1286 138950
188 1UPN 1 A ECHOVIRUS 11 COAT PROTEIN VP1 138949
189 1NN8 2 1 coat protein VP1 138950
190 1M11 2 1 COAT PROTEIN VP1 138949
191 1JEW 2 1 COXSACKIEVIRUS CAPSID, COAT PROTEIN VP1 Residues 571-851 138949
192 1DGI 2 1 VP1 138950
193 1D3E 2 1 PROTEIN (RHINOVIRUS 16 COAT PROTEIN VP1) 169066
194 1D3I 2 1 PROTEIN (RHINOVIRUS 14 COAT PROTEIN VP1) 169066
195 1VRH 1 1 RHINOVIRUS 14 147712
196 1RUC 1 1 RHINOVIRUS 14 147712
197 1RUD 1 1 RHINOVIRUS 14 147712
198 1RUE 1 1 RHINOVIRUS 14 147712
199 1RUF 1 1 RHINOVIRUS 14 147712
200 1RUG 1 1 RHINOVIRUS 14 147712
201 1RUH 1 1 RHINOVIRUS 14 147712
202 1RUI 1 1 RHINOVIRUS 14 147712
203 1RUJ 1 1 RHINOVIRUS 14 147712
204 1HRV 1 1 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1) 147712
205 2HWB 1 1 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1) 147712
206 2HWC 1 1 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1) 147712
207 2HWD 1 1 HUMAN RHINOVIRUS 1A COAT PROTEIN (SUBUNIT VP1) 147711
208 2HWE 1 1 HUMAN RHINOVIRUS 1A COAT PROTEIN (SUBUNIT VP1) 147711
209 2HWF 1 1 HUMAN RHINOVIRUS 1A COAT PROTEIN (SUBUNIT VP1) 147711
210 1HRI 1 1 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1) 147712
211 1R09 1 1 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1) 147712
212 1R08 1 1 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1) 147712
213 1RMU 1 1 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1) 147712
214 2R04 1 1 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1) 147712
215 2R06 1 1 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1) 147712
216 2R07 1 1 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1) 147712
217 2RM2 1 1 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1) 147712
218 2RMU 1 1 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1) 147712
219 2RR1 1 1 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1) 147712
220 2RS1 1 1 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1) 169066
221 2RS3 1 1 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1) 147712
222 2RS5 1 1 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1) 147712