6ILL

Cryo-EM structure of Echovirus 6 complexed with its uncoating receptor FcRn at PH 5.5


Sequence Similarity Clusters for the Entities in PDB 6ILL

Entity #1 | Chains: A
Capsid protein VP1 protein, length: 273 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 6 17510
95 % 1 6 15716
90 % 1 6 14145
70 % 8 16 5260
50 % 11 29 924
40 % 118 234 197
30 % 120 238 207
Entity #2 | Chains: B
Capsid protein VP2 protein, length: 252 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 13955
95 % 1 7 13479
90 % 1 7 13270
70 % 11 31 868
50 % 112 235 199
40 % 112 235 213
30 % 117 248 215
Entity #3 | Chains: C
Capsid protein VP3 protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 6 16286
95 % 1 7 13442
90 % 1 7 13226
70 % 11 31 865
50 % 119 245 177
40 % 121 249 186
30 % 142 291 131
Entity #4 | Chains: D
Capsid protein VP4 protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 50828
95 % 3 8 10551
90 % 10 20 4194
70 % 31 81 847
50 % 90 161 418
40 % 90 161 446
30 % 90 161 464

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

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Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4Q4W 1 1 Coxsackievirus capsid protein VP1 138950
2 4Q4X 1 1 Coxsackievirus capsid protein VP1 138950
3 4Q4Y 1 1 Coxsackievirus capsid protein VP1 138950
4 6T4C 1 A VP1 1330520 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
5 6T48 1 A VP1 1330520 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
6 5C8C 1 A VP1 138948
7 1AYM 1 1 HUMAN RHINOVIRUS 16 COAT PROTEIN 169066
8 4WM8 1 A VP1 138951
9 5BNP 1 A Capsid protein VP1 UNP residues 565-861 138951
10 3VBH 1 A Genome Polyprotein, capsid protein VP1 138948
11 1PVC 2 1 POLIOVIRUS TYPE 3, SABIN STRAIN P3/SABIN P3/LEON/12A(1)B 138950
12 5BNO 1 A Capsid protein VP1 UNP residues 565-861 138951
13 1FPN 1 1 COAT PROTEIN VP1 147711
14 5OSN 1 A Capsid protein 12064
15 1ND2 1 A coat protein VP1 147711
16 4WM7 1 A VP1 138951
17 1HXS 1 1 GENOME POLYPROTEIN, COAT PROTEIN VP1 RESIDUES 579-880 138950
18 5BNN 1 A Capsid protein VP1 UNP residues 565-861 138951
19 1NCQ 1 A COAT PROTEIN VP1 147712
20 1D4M 1 1 PROTEIN (COXSACKIEVIRUS A9) VP1 138949
21 4RHV 1 1 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1) 147712
22 1EAH 1 1 POLIOVIRUS TYPE 2 COAT PROTEINS VP1 TO VP4 138950
23 4Q4V 1 1 Coxsackievirus capsid protein VP1 138950
24 1K5M 1 A COAT PROTEIN VP1 (P1D) 147712
25 1QJU 1 1 PROTEIN VP1 RESIDUES 569-853 147711
26 3VBF 1 A Genome Polyprotein, capsid protein VP1 STRAIN FUYANG, ANHUI. P.R.C/17.08/1 138948
27 2PLV 1 1 HUMAN POLIOVIRUS TYPE 1 (SUBUNIT VP1) 138950
28 4PDW 1 A Genome polyprotein resdiues 568-856 147712 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
29 4CDQ 1 A VP1 138948
30 3ZFE 1 A VP1 VIRION OF HUMAN ENTEROVIRUS 71 138948
31 1QJX 1 1 PROTEIN VP1 RESIDUES 569-853 147711
32 1QJY 1 1 PROTEIN VP1 RESIDUES 569-853 147711
33 1NCR 1 A coat protein VP1 147711
34 3VBO 1 A Genome Polyprotein, capsid protein VP1 138948
35 1AYN 1 1 HUMAN RHINOVIRUS 16 COAT PROTEIN 169066
36 1C8M 1 1 HUMAN RHINOVIRUS 16 COAT PROTEIN RESIDUES 569-853 147711
37 1AR7 2 1 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
38 1ND3 1 A coat protein VP1 147711
39 1BEV 1 1 BOVINE ENTEROVIRUS COAT PROTEINS VP1 TO VP4 12064
40 4JGY 1 A Polyprotein, capsid protein VP1 STRAIN NINGBO.CHN/028-2/2009 138948
41 1AL2 2 1 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
42 1PO1 2 1 POLIOVIRUS TYPE 1 MAHONEY 138950
43 1AR9 2 1 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
44 4RQP 1 A, E, I, M, Q Capsid protein VP1 138948
45 5C4W 1 A VP1 138948
46 1H8T 1 A ECHOVIRUS 11 COAT PROTEIN VP1 138949
47 1PO2 2 1 POLIOVIRUS TYPE 1 MAHONEY 138950
48 1ASJ 2 1 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
49 1Z7S 1 1 Human COXSACKIEVIRUS A21 Viral Protein 1 138950
50 1OOP 1 A Coat protein VP1 138949
51 4CDX 1 A VP1 138948
52 4RR3 1 A, E, I, M, Q Capsid protein VP1 138948
53 3VDD 1 A Protein VP1 UNP residues 568-850 147711
54 1NA1 1 A Coat protein VP1 147712
55 5C9A 1 A VP1 138948
56 4CDU 1 A VP1 138948
57 1VBB 2 1 POLIOVIRUS TYPE 3 THE NUMBERING OF THE VP1 RESIDUES HAS BEEN ALTERED TO FACILITATE COMPARISON WITH THE STRUCTURE OF THE MAHONEY STRAIN OF TYPE 1 POLIOVIRUS (PDB ENTRY 2PLV). MAHONEY HAS A TWO RESIDUE INSERTION, RELATIVE TO P3/SABIN, LOCATED IN THE DISORDERED N-TERMINUS OF VP1. THUS THE RESIDUES NUMBERED 24 - 302 IN THIS ENTRY ARE ACTUALLY RESIDUES 22 - 300. 138950
58 1POV 2 1 POLIOVIRUS NATIVE EMPTY CAPSID (TYPE 1) 138950
59 1AR6 2 1 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
60 1AR8 2 1 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
61 4N53 1 A Capsid protein VP1 138948
62 4CDW 1 A VP1 138948
63 4CEY 1 A VP1 138948
64 1VBC 2 1 POLIOVIRUS TYPE 3 THE NUMBERING OF THE VP1 RESIDUES HAS BEEN ALTERED TO FACILITATE COMPARISON WITH THE STRUCTURE OF THE MAHONEY STRAIN OF TYPE 1 POLIOVIRUS (PDB ENTRY 2PLV). MAHONEY HAS A TWO RESIDUE INSERTION, RELATIVE TO P3/SABIN, LOCATED IN THE DISORDERED N-TERMINUS OF VP1. THUS THE RESIDUES NUMBERED 24 - 302 IN THIS ENTRY ARE ACTUALLY RESIDUES 22 - 300. 138950
65 3TN9 1 1 Protein VP1 147711
66 3ZFG 1 A VP1 VIRION OF HUMAN ENTEROVIRUS 71 138948
67 1VBE 2 1 POLIOVIRUS TYPE 3 THE NUMBERING OF THE VP1 RESIDUES HAS BEEN ALTERED TO FACILITATE COMPARISON WITH THE STRUCTURE OF THE MAHONEY STRAIN OF TYPE 1 POLIOVIRUS (PDB ENTRY 2PLV). MAHONEY HAS A TWO RESIDUE INSERTION, RELATIVE TO P3/SABIN, LOCATED IN THE DISORDERED N-TERMINUS OF VP1. THUS THE RESIDUES NUMBERED 24 - 302 IN THIS ENTRY ARE ACTUALLY RESIDUES 22 - 300. 138950
68 4CEW 1 A VP1 138948
69 3VBS 1 A Genome Polyprotein, capsid protein VP1 138948
70 5ABJ 1 A VP1 UNP RESIDUES 566-862 138948
71 1VBD 2 1 POLIOVIRUS TYPE 1 MAHONEY P1/MAHONEY 138950
72 3ZFF 1 A VP1 138948
73 1RHI 1 1 HUMAN RHINOVIRUS 3 COAT PROTEIN 147712
74 1VBA 2 1 POLIOVIRUS TYPE 3 THE NUMBERING OF THE VP1 RESIDUES HAS BEEN ALTERED TO FACILITATE COMPARISON WITH THE STRUCTURE OF THE MAHONEY STRAIN OF TYPE 1 POLIOVIRUS (PDB ENTRY 2PLV). MAHONEY HAS A TWO RESIDUE INSERTION, RELATIVE TO P3/SABIN, LOCATED IN THE DISORDERED N-TERMINUS OF VP1. THUS THE RESIDUES NUMBERED 24 - 302 IN THIS ENTRY ARE ACTUALLY RESIDUES 22 - 300. 138950
75 4JGZ 1 A Polyprotein, capsid protein VP1 STRAIN NINGBO.CHN/028-2/2009 138948
76 1MQT 1 A Polyprotein SVDV COAT PROTEIN VP1 138949
77 1RVF 1 1 HUMAN RHINOVIRUS 14 COAT PROTEIN 147712
78 4GB3 1 1 coat protein 1 UNP residues 571-851 138949
79 2X5I 1 A VP1 138949
80 1PIV 2 1 POLIOVIRUS TYPE 3 (SUBUNIT VP1) 138950
81 1COV 1 1 COXSACKIEVIRUS COAT PROTEIN 138949
82 1R1A 1 1 HUMAN RHINOVIRUS 1A COAT PROTEIN (SUBUNIT VP1) 147711
83 1EV1 1 1 ECHOVIRUS 1 VP1, VP2, VP3, VP4 138949
84 4N43 1 A Capsid protein VP1 EV71 capsid protein VP1 138948
85 4YVS 1 A, D, G, J, M Capsid protein VP1 138948
86 1V9U 1 1 Coat protein VP1 147711
87 4RS5 3 A, D, G, J, M Capsid protein VP1 138948
88 4GMP 2 1 capsid protein VP1 UNP residues 566-862 138948
89 4AED 1 A VP1 138948
90 4YVW 1 A, D, E, J, M Capsid protein VP1 138948
91 3DPR 1 A Protein VP1 147711
92 4L3B 1 A Protein VP1 UNP residues 568-856 147711
93 6LQD 1 A Capsid protein VP1 138948 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
94 6LHT 3 A, B, C, D, E VP1 protein 138948
95 6LHK 1 A VP1 protein 138948
96 6LHL 1 A VP1 protein 138948
97 6LHO 1 A VP1 protein 138948
98 6LHP 3 A VP1 protein 138948
99 6LHQ 1 A VP1 protein 138948
100 6LHA 1 A VP1 protein 138948
101 6LHB 1 A VP1 138948
102 6LHC 1 A VP1 138948
103 6UH1 1 A VP1 138948
104 6UH6 1 A VP1 138948
105 6UH7 1 A VP1 138948
106 6SNW 1 A Capsid protein VP1 138948 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
107 6SNB 1 A Capsid protein VP1 138948 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
108 6SMG 1 A Capsid protein VP1 138948 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
109 6SK5 3 A Rhinovirus B5 VP1 147712
110 6SK6 3 A Rhinovirus B5 VP1 147712
111 6SK7 1 A VP1 capsid protein 147711 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
112 6PSF 1 A Capsid protein VP1 UNP residues 568-846 463676 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
113 6PPO 1 A Capsid protein VP1 UNP residues 568-846 463676 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
114 6P9O 1 1 VP1 UNP residues 580-881 138950
115 6P9W 1 1 VP1 UNP residues 580-881 138950
116 6RJF 1 1 VP1 138949
117 6O06 1 A VP1 UNP residues 570-850 138949
118 6MZI 1 A viral protein 1 UNP residues 565-861 138951
119 6I2K 1 A Polyprotein 138948
120 6ILL 1 A Capsid protein VP1 138949
121 6ILM 1 A Capsid protein VP1 138949
122 6ILN 1 A Capsid protein VP1 138949
123 6ILP 1 A Capsid protein VP1 138949
124 6ILJ 1 A Capsid protein VP1 138949
125 6ILK 1 A Capsid protein VP1 138949
126 6IIO 1 A VP1 138948
127 6IIJ 1 A VP1 138948
128 6AKS 1 A VP1 138948
129 6AKT 1 A VP1 138948
130 6AKU 1 A VP1 138948
131 6HHT 1 A1, A2, D1, D2, G1, G2, J1, J2, M1, M2, P1, P2, S1, S2, V1, V2, Y2, b2, e2, h2, k2, n2, q2, t2, w2 Echovirus 18 capsid protein 1 138949
132 6AJ7 3 A Capsid protein VP1 138951
133 6AJ9 5 A Capsid protein VP1 138951
134 6AJ2 1 A Capsid protein VP1 138951 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
135 6AJ3 1 A Capsid protein VP1 138951 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
136 6AJ0 1 A Viral protein 1 138951
137 6HBG 1 A Echovirus 18 viral protein 1 138949 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
138 6HBH 1 A Echovirus 18 capsid protein 1 138949
139 6HBJ 1 A Viral protein 1 138949 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
140 6HBK 1 A, D, G, J, M, P, S, V, Y, b, e Echovirus 18 capsid protein 1 138949
141 6HBL 1 A, D, G, J, M, P, S, V, Y, b, e, h, k, n, q Echovirus 18 capsid protein 1 138949
142 6ACY 1 A VP1 138948
143 6ACZ 1 A VP1 138948
144 6AD0 3 A VP1 138948
145 6AD1 1 A VP1 138948
146 6ACU 1 A VP1 138948
147 6ACW 1 A VP1 138948
148 6GZV 1 A Capsid protein VP1 138949 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
149 6DIZ 1 A VP1 138948
150 5ZUD 1 A Capsid protein VP1 138948
151 5ZUF 1 A Capsid protein VP1 138948
152 6CV1 1 A viral protein 1 UNP residues 565-861 138951
153 6CV2 1 A viral protein 1 UNP residues 565-861 138951
154 6CV3 1 A viral protein 1 UNP residues 565-861 138951
155 6CV4 1 A viral protein 1 UNP residues 565-861 138951
156 6CV5 1 A viral protein 1 UNP residues 565-861 138951
157 6CVB 1 A viral protein 1 UNP residues 565-861 138951
158 6CSA 1 A viral protein 1 UNP residues 565-861 138951
159 6CSG 1 A viral protein 1 UNP residues 565-861 138951
160 6CSH 1 A viral protein 1 UNP residues 565-861 138951
161 6CRP 1 A viral protein 1 UNP residues 565-861 138951
162 6CRR 1 A viral protein 1 UNP residues 565-861 138951
163 6CRS 1 A viral protein 1 UNP residues 565-861 138951
164 6CRU 1 A viral protein 1 UNP residues 565-861 138951
165 6CS3 1 A viral protein 1 UNP residues 565-861 138951
166 6CS4 1 A viral protein 1 UNP residues 565-861 138951
167 6CS5 1 A viral protein 1 UNP residues 565-861 138951
168 6CS6 1 A viral protein 1 UNP residues 565-861 138951
169 5YHQ 1 A Capsid protein VP1 138948
170 6EIT 1 1 VP1 138950
171 5XS4 1 A Genome polyprotein UNP residues 566-870 138948
172 5XS5 1 A Genome polyprotein UNP residue 566-870 138948
173 5XS7 3 A Genome polyprotein UNP residues 566-870 138948
174 5W3L 1 A viral protein 1 UNP residues 568-856 147712
175 5W3M 3 A viral protein 1 UNP residues 568-856 147712
176 5W3O 3 A viral protein 1 UNP residues 568-856 147712
177 5W3E 3 A viral protein 1 UNP residues 568-856 147712
178 5O5P 1 1 Capsid proteins, VP1 138950
179 5O5B 1 1 Capsid proteins 138950
180 5TSK 1 A coxsackievirus A16 empty procapsid VP1 subunit 138948
181 5K0U 1 A Capsid protein VP1 UNP residues 568-846 463676
182 5JZG 1 A Capsid protein VP1 UNP residues 568-846 463676
183 3JD7 1 1 Capsid protein VP1 UNP residues 571-851 138949
184 3JBC 1 1 Capsid protein VP1 UNP residues 580-881 138950
185 3JBD 1 1 Capsid protein VP1 UNP residues 580-881 138950
186 3JBE 1 1 Capsid protein VP1 UNP residues 580-881 138950
187 3JBF 1 1 Capsid protein VP1 UNP residues 580-881 138950
188 3JBG 1 1 Capsid protein VP1 UNP residues 580-881 138950
189 3J9F 1 1 Protein VP1 UNP residues 580-881 138950
190 3J91 2 1 VP1 UNP residues 566-682 138948
191 3J8F 1 1 Capsid protein VP1 UNP residues 580-881 138950
192 4C0U 1 A VP1 138948
193 4C0Y 1 A VP1 138948
194 4C10 3 A VP1 138948
195 3J48 1 1 Protein VP1 UNP residues 580-881 138950
196 3J3O 4 1 Protein VP1 UNP residues 580-881 138950
197 3J3P 3 1 Protein VP1 UNP residues 580-881 138950
198 3IYP 1 A Capsid protein 138949
199 3EPC 2 1 Protein VP1 138950
200 3EPD 3 1 protein VP1 138950
201 3EPF 2 1 Protein VP1 138950
202 2C8I 1 A ECHOVIRUS 11 COAT PROTEIN VP1 138949
203 1Z7Z 1 1 human coxsackievirus A21 Viral Protein 1 residues 1073-1286 138950
204 1UPN 1 A ECHOVIRUS 11 COAT PROTEIN VP1 138949
205 1NN8 2 1 coat protein VP1 138950
206 1M11 2 1 COAT PROTEIN VP1 138949
207 1JEW 2 1 COXSACKIEVIRUS CAPSID, COAT PROTEIN VP1 Residues 571-851 138949
208 1DGI 2 1 VP1 138950
209 1D3E 2 1 PROTEIN (RHINOVIRUS 16 COAT PROTEIN VP1) 169066
210 1D3I 2 1 PROTEIN (RHINOVIRUS 14 COAT PROTEIN VP1) 169066
211 1VRH 1 1 RHINOVIRUS 14 147712
212 1RUC 1 1 RHINOVIRUS 14 147712
213 1RUD 1 1 RHINOVIRUS 14 147712
214 1RUE 1 1 RHINOVIRUS 14 147712
215 1RUF 1 1 RHINOVIRUS 14 147712
216 1RUG 1 1 RHINOVIRUS 14 147712
217 1RUH 1 1 RHINOVIRUS 14 147712
218 1RUI 1 1 RHINOVIRUS 14 147712
219 1RUJ 1 1 RHINOVIRUS 14 147712
220 1HRV 1 1 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1) 147712
221 2HWB 1 1 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1) 147712
222 2HWC 1 1 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1) 147712
223 2HWD 1 1 HUMAN RHINOVIRUS 1A COAT PROTEIN (SUBUNIT VP1) 147711
224 2HWE 1 1 HUMAN RHINOVIRUS 1A COAT PROTEIN (SUBUNIT VP1) 147711
225 2HWF 1 1 HUMAN RHINOVIRUS 1A COAT PROTEIN (SUBUNIT VP1) 147711
226 1HRI 1 1 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1) 147712
227 1R09 1 1 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1) 147712
228 1R08 1 1 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1) 147712
229 1RMU 1 1 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1) 147712
230 2R04 1 1 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1) 147712
231 2R06 1 1 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1) 147712
232 2R07 1 1 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1) 147712
233 2RM2 1 1 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1) 147712
234 2RMU 1 1 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1) 147712
235 2RR1 1 1 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1) 147712
236 2RS1 1 1 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1) 169066
237 2RS3 1 1 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1) 147712
238 2RS5 1 1 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1) 147712