Sequence Similarity Clusters for the Entities in PDB 6ILL

Entity #1 | Chains: A
Capsid protein VP1 protein, length: 273 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 6 15327
95 % 1 6 14680
90 % 1 6 14444
70 % 8 16 4806
50 % 11 29 833
40 % 87 167 233
30 % 94 206 211
Entity #2 | Chains: B
Capsid protein VP2 protein, length: 252 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 12534
95 % 1 7 12332
90 % 1 7 12200
70 % 11 31 758
50 % 87 204 202
40 % 87 204 214
30 % 92 217 215
Entity #3 | Chains: C
Capsid protein VP3 protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 6 13213
95 % 1 7 11980
90 % 1 7 11749
70 % 11 31 760
50 % 96 216 180
40 % 96 218 191
30 % 117 259 129
Entity #4 | Chains: D
Capsid protein VP4 protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 46630
95 % 3 8 9648
90 % 10 20 3817
70 % 29 79 764
50 % 72 141 431
40 % 72 141 452
30 % 72 141 473

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

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Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4Q4W 1 1 Coxsackievirus capsid protein VP1 138950
2 4Q4X 1 1 Coxsackievirus capsid protein VP1 138950
3 4Q4Y 1 1 Coxsackievirus capsid protein VP1 138950
4 5C8C 1 A VP1 138948
5 1AYM 1 1 HUMAN RHINOVIRUS 16 COAT PROTEIN 169066
6 4WM8 1 A VP1 138951
7 5BNP 1 A Capsid protein VP1 UNP residues 565-861 138951
8 3VBH 1 A Genome Polyprotein, capsid protein VP1 138948
9 1PVC 2 1 POLIOVIRUS TYPE 3, SABIN STRAIN P3/SABIN P3/LEON/12A(1)B 138950
10 5BNO 1 A Capsid protein VP1 UNP residues 565-861 138951
11 1FPN 1 1 COAT PROTEIN VP1 147711
12 1ND2 1 A coat protein VP1 147711
13 4WM7 1 A VP1 138951
14 1HXS 1 1 GENOME POLYPROTEIN, COAT PROTEIN VP1 RESIDUES 579-880 138950
15 5BNN 1 A Capsid protein VP1 UNP residues 565-861 138951
16 1NCQ 1 A COAT PROTEIN VP1 147712
17 1D4M 1 1 PROTEIN (COXSACKIEVIRUS A9) VP1 138949
18 4RHV 1 1 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1) 147712
19 1EAH 1 1 POLIOVIRUS TYPE 2 COAT PROTEINS VP1 TO VP4 138950
20 4Q4V 1 1 Coxsackievirus capsid protein VP1 138950
21 1K5M 1 A COAT PROTEIN VP1 (P1D) 147712
22 1QJU 1 1 PROTEIN VP1 RESIDUES 569-853 147711
23 3VBF 1 A Genome Polyprotein, capsid protein VP1 STRAIN FUYANG, ANHUI. P.R.C/17.08/1 138948
24 2PLV 1 1 HUMAN POLIOVIRUS TYPE 1 (SUBUNIT VP1) 138950
25 4PDW 1 A Genome polyprotein resdiues 568-856 147712 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
26 4CDQ 1 A VP1 138948
27 3ZFE 1 A VP1 VIRION OF HUMAN ENTEROVIRUS 71 138948
28 1QJX 1 1 PROTEIN VP1 RESIDUES 569-853 147711
29 1QJY 1 1 PROTEIN VP1 RESIDUES 569-853 147711
30 1NCR 1 A coat protein VP1 147711
31 3VBO 1 A Genome Polyprotein, capsid protein VP1 138948
32 1AYN 1 1 HUMAN RHINOVIRUS 16 COAT PROTEIN 169066
33 1C8M 1 1 HUMAN RHINOVIRUS 16 COAT PROTEIN RESIDUES 569-853 147711
34 1AR7 2 1 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
35 1ND3 1 A coat protein VP1 147711
36 1BEV 1 1 BOVINE ENTEROVIRUS COAT PROTEINS VP1 TO VP4 12064
37 4JGY 1 A Polyprotein, capsid protein VP1 STRAIN NINGBO.CHN/028-2/2009 138948
38 1AL2 2 1 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
39 1PO1 2 1 POLIOVIRUS TYPE 1 MAHONEY 138950
40 1AR9 2 1 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
41 4RQP 1 A, E, I, M, Q Capsid protein VP1 138948
42 5C4W 1 A VP1 138948
43 1H8T 1 A ECHOVIRUS 11 COAT PROTEIN VP1 138949
44 1PO2 2 1 POLIOVIRUS TYPE 1 MAHONEY 138950
45 1ASJ 2 1 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
46 1Z7S 1 1 Human COXSACKIEVIRUS A21 Viral Protein 1 138950
47 1OOP 1 A Coat protein VP1 138949
48 4CDX 1 A VP1 138948
49 4RR3 1 A, E, I, M, Q Capsid protein VP1 138948
50 3VDD 1 A Protein VP1 UNP residues 568-850 147711
51 1NA1 1 A Coat protein VP1 147712
52 5C9A 1 A VP1 138948
53 4CDU 1 A VP1 138948
54 1VBB 2 1 POLIOVIRUS TYPE 3 THE NUMBERING OF THE VP1 RESIDUES HAS BEEN ALTERED TO FACILITATE COMPARISON WITH THE STRUCTURE OF THE MAHONEY STRAIN OF TYPE 1 POLIOVIRUS (PDB ENTRY 2PLV). MAHONEY HAS A TWO RESIDUE INSERTION, RELATIVE TO P3/SABIN, LOCATED IN THE DISORDERED N-TERMINUS OF VP1. THUS THE RESIDUES NUMBERED 24 - 302 IN THIS ENTRY ARE ACTUALLY RESIDUES 22 - 300. 138950
55 1POV 2 1 POLIOVIRUS NATIVE EMPTY CAPSID (TYPE 1) 138950
56 1AR6 2 1 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
57 1AR8 2 1 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
58 4N53 1 A Capsid protein VP1 138948
59 4CDW 1 A VP1 138948
60 4CEY 1 A VP1 138948
61 1VBC 2 1 POLIOVIRUS TYPE 3 THE NUMBERING OF THE VP1 RESIDUES HAS BEEN ALTERED TO FACILITATE COMPARISON WITH THE STRUCTURE OF THE MAHONEY STRAIN OF TYPE 1 POLIOVIRUS (PDB ENTRY 2PLV). MAHONEY HAS A TWO RESIDUE INSERTION, RELATIVE TO P3/SABIN, LOCATED IN THE DISORDERED N-TERMINUS OF VP1. THUS THE RESIDUES NUMBERED 24 - 302 IN THIS ENTRY ARE ACTUALLY RESIDUES 22 - 300. 138950
62 3TN9 1 1 Protein VP1 147711
63 3ZFG 1 A VP1 VIRION OF HUMAN ENTEROVIRUS 71 138948
64 1VBE 2 1 POLIOVIRUS TYPE 3 THE NUMBERING OF THE VP1 RESIDUES HAS BEEN ALTERED TO FACILITATE COMPARISON WITH THE STRUCTURE OF THE MAHONEY STRAIN OF TYPE 1 POLIOVIRUS (PDB ENTRY 2PLV). MAHONEY HAS A TWO RESIDUE INSERTION, RELATIVE TO P3/SABIN, LOCATED IN THE DISORDERED N-TERMINUS OF VP1. THUS THE RESIDUES NUMBERED 24 - 302 IN THIS ENTRY ARE ACTUALLY RESIDUES 22 - 300. 138950
65 4CEW 1 A VP1 138948
66 3VBS 1 A Genome Polyprotein, capsid protein VP1 138948
67 5ABJ 1 A VP1 UNP RESIDUES 566-862 138948
68 1VBD 2 1 POLIOVIRUS TYPE 1 MAHONEY P1/MAHONEY 138950
69 3ZFF 1 A VP1 138948
70 1RHI 1 1 HUMAN RHINOVIRUS 3 COAT PROTEIN 147712
71 1VBA 2 1 POLIOVIRUS TYPE 3 THE NUMBERING OF THE VP1 RESIDUES HAS BEEN ALTERED TO FACILITATE COMPARISON WITH THE STRUCTURE OF THE MAHONEY STRAIN OF TYPE 1 POLIOVIRUS (PDB ENTRY 2PLV). MAHONEY HAS A TWO RESIDUE INSERTION, RELATIVE TO P3/SABIN, LOCATED IN THE DISORDERED N-TERMINUS OF VP1. THUS THE RESIDUES NUMBERED 24 - 302 IN THIS ENTRY ARE ACTUALLY RESIDUES 22 - 300. 138950
72 4JGZ 1 A Polyprotein, capsid protein VP1 STRAIN NINGBO.CHN/028-2/2009 138948
73 1MQT 1 A Polyprotein SVDV COAT PROTEIN VP1 138949
74 1RVF 1 1 HUMAN RHINOVIRUS 14 COAT PROTEIN 147712
75 4GB3 1 1 coat protein 1 UNP residues 571-851 138949
76 2X5I 1 A VP1 138949
77 1PIV 2 1 POLIOVIRUS TYPE 3 (SUBUNIT VP1) 138950
78 1COV 1 1 COXSACKIEVIRUS COAT PROTEIN 138949
79 1R1A 1 1 HUMAN RHINOVIRUS 1A COAT PROTEIN (SUBUNIT VP1) 147711
80 1EV1 1 1 ECHOVIRUS 1 VP1, VP2, VP3, VP4 138949
81 4N43 1 A Capsid protein VP1 EV71 capsid protein VP1 138948
82 4YVS 1 A, D, G, J, M Capsid protein VP1 138948
83 1V9U 1 1 Coat protein VP1 147711
84 4RS5 3 A, D, G, J, M Capsid protein VP1 138948
85 4GMP 2 1 capsid protein VP1 UNP residues 566-862 138948
86 4AED 1 A VP1 138948
87 4YVW 1 A, D, E, J, M Capsid protein VP1 138948
88 3DPR 1 A Protein VP1 147711
89 4L3B 1 A Protein VP1 UNP residues 568-856 147711
90 6RJF 1 1 VP1 138949
91 6O06 1 A VP1 UNP residues 570-850 138949
92 6MZI 1 A viral protein 1 UNP residues 565-861 138951
93 6I2K 1 A Polyprotein 138948
94 6ILL 1 A Capsid protein VP1 138949
95 6ILM 1 A Capsid protein VP1 138949
96 6ILN 1 A Capsid protein VP1 138949
97 6ILP 1 A Capsid protein VP1 138949
98 6ILJ 1 A Capsid protein VP1 138949
99 6ILK 1 A Capsid protein VP1 138949
100 6IIO 1 A VP1 138948
101 6IIJ 1 A VP1 138948
102 6AKS 1 A VP1 138948
103 6AKT 1 A VP1 138948
104 6AKU 1 A VP1 138948
105 6HHT 1 A1, A2, D1, D2, G1, G2, J1, J2, M1, M2, P1, P2, S1, S2, V1, V2, Y2, b2, e2, h2, k2, n2, q2, t2, w2 Echovirus 18 capsid protein 1 138949
106 6AJ7 3 A Capsid protein VP1 138951
107 6AJ9 5 A Capsid protein VP1 138951
108 6AJ2 1 A Capsid protein VP1 138951 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
109 6AJ3 1 A Capsid protein VP1 138951 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
110 6AJ0 1 A Viral protein 1 138951
111 6HBG 1 A Echovirus 18 viral protein 1 138949 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
112 6HBH 1 A Echovirus 18 capsid protein 1 138949
113 6HBJ 1 A Viral protein 1 138949 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
114 6HBK 1 A, D, G, J, M, P, S, V, Y, b, e Echovirus 18 capsid protein 1 138949
115 6HBL 1 A, D, G, J, M, P, S, V, Y, b, e, h, k, n, q Echovirus 18 capsid protein 1 138949
116 6ACY 1 A VP1 138948
117 6ACZ 1 A VP1 138948
118 6AD0 3 A VP1 138948
119 6AD1 1 A VP1 138948
120 6ACU 1 A VP1 138948
121 6ACW 1 A VP1 138948
122 6GZV 1 A Capsid protein VP1 138949 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
123 6DIZ 1 A VP1 138948
124 6DIJ 1 A VP1 138948
125 6CSA 1 A viral protein 1 UNP residues 565-861 138951
126 6CSG 1 A viral protein 1 UNP residues 565-861 138951
127 6CSH 1 A viral protein 1 UNP residues 565-861 138951
128 6CRP 1 A viral protein 1 UNP residues 565-861 138951
129 6CRR 1 A viral protein 1 UNP residues 565-861 138951
130 6CRS 1 A viral protein 1 UNP residues 565-861 138951
131 6CRU 1 A viral protein 1 UNP residues 565-861 138951
132 6CS3 1 A viral protein 1 UNP residues 565-861 138951
133 6CS4 1 A viral protein 1 UNP residues 565-861 138951
134 6CS5 1 A viral protein 1 UNP residues 565-861 138951
135 6CS6 1 A viral protein 1 UNP residues 565-861 138951
136 5YHQ 1 A Capsid protein VP1 138948
137 6EIT 1 1 VP1 138950
138 5OSN 1 A Capsid protein 12064
139 5XS4 1 A Genome polyprotein UNP residues 566-870 138948
140 5XS5 1 A Genome polyprotein UNP residue 566-870 138948
141 5XS7 3 A Genome polyprotein UNP residues 566-870 138948
142 5W3L 1 A viral protein 1 UNP residues 568-856 147712
143 5W3M 3 A viral protein 1 UNP residues 568-856 147712
144 5W3O 3 A viral protein 1 UNP residues 568-856 147712
145 5W3E 3 A viral protein 1 UNP residues 568-856 147712
146 5O5P 1 1 Capsid proteins, VP1 138950
147 5O5B 1 1 Capsid proteins 138950
148 5TSK 1 A coxsackievirus A16 empty procapsid VP1 subunit 138948
149 5K0U 1 A Capsid protein VP1 UNP residues 568-846 463676
150 5JZG 1 A Capsid protein VP1 UNP residues 568-846 463676
151 3JD7 1 1 Capsid protein VP1 UNP residues 571-851 138949
152 3JBC 1 1 Capsid protein VP1 UNP residues 580-881 138950
153 3JBD 1 1 Capsid protein VP1 UNP residues 580-881 138950
154 3JBE 1 1 Capsid protein VP1 UNP residues 580-881 138950
155 3JBF 1 1 Capsid protein VP1 UNP residues 580-881 138950
156 3JBG 1 1 Capsid protein VP1 UNP residues 580-881 138950
157 3J9F 1 1 Protein VP1 UNP residues 580-881 138950
158 3J91 2 1 VP1 UNP residues 566-682 138948
159 3J8F 1 1 Capsid protein VP1 UNP residues 580-881 138950
160 4C0U 1 A VP1 138948
161 4C0Y 1 A VP1 138948
162 4C10 3 A VP1 138948
163 3J48 1 1 Protein VP1 UNP residues 580-881 138950
164 3J3O 4 1 Protein VP1 UNP residues 580-881 138950
165 3J3P 3 1 Protein VP1 UNP residues 580-881 138950
166 3IYP 1 A Capsid protein 138949
167 3EPC 2 1 Protein VP1 138950
168 3EPD 3 1 protein VP1 138950
169 3EPF 2 1 Protein VP1 138950
170 2C8I 1 A ECHOVIRUS 11 COAT PROTEIN VP1 138949
171 1Z7Z 1 1 human coxsackievirus A21 Viral Protein 1 residues 1073-1286 138950
172 1UPN 1 A ECHOVIRUS 11 COAT PROTEIN VP1 138949
173 1NN8 2 1 coat protein VP1 138950
174 1M11 2 1 COAT PROTEIN VP1 138949
175 1JEW 2 1 COXSACKIEVIRUS CAPSID, COAT PROTEIN VP1 Residues 571-851 138949
176 1DGI 2 1 VP1 138950
177 1D3E 2 1 PROTEIN (RHINOVIRUS 16 COAT PROTEIN VP1) 169066
178 1D3I 2 1 PROTEIN (RHINOVIRUS 14 COAT PROTEIN VP1) 169066
179 1VRH 1 1 RHINOVIRUS 14 147712
180 1RUC 1 1 RHINOVIRUS 14 147712
181 1RUD 1 1 RHINOVIRUS 14 147712
182 1RUE 1 1 RHINOVIRUS 14 147712
183 1RUF 1 1 RHINOVIRUS 14 147712
184 1RUG 1 1 RHINOVIRUS 14 147712
185 1RUH 1 1 RHINOVIRUS 14 147712
186 1RUI 1 1 RHINOVIRUS 14 147712
187 1RUJ 1 1 RHINOVIRUS 14 147712
188 1HRV 1 1 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1) 147712
189 2HWB 1 1 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1) 147712
190 2HWC 1 1 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1) 147712
191 2HWD 1 1 HUMAN RHINOVIRUS 1A COAT PROTEIN (SUBUNIT VP1) 147711
192 2HWE 1 1 HUMAN RHINOVIRUS 1A COAT PROTEIN (SUBUNIT VP1) 147711
193 2HWF 1 1 HUMAN RHINOVIRUS 1A COAT PROTEIN (SUBUNIT VP1) 147711
194 1HRI 1 1 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1) 147712
195 1R09 1 1 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1) 147712
196 1R08 1 1 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1) 147712
197 1RMU 1 1 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1) 147712
198 2R04 1 1 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1) 147712
199 2R06 1 1 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1) 147712
200 2R07 1 1 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1) 147712
201 2RM2 1 1 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1) 147712
202 2RMU 1 1 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1) 147712
203 2RR1 1 1 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1) 147712
204 2RS1 1 1 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1) 169066
205 2RS3 1 1 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1) 147712
206 2RS5 1 1 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1) 147712