Sequence Similarity Clusters for the Entities in PDB 6ILL

Entity #1 | Chains: A
Capsid protein VP1 protein, length: 273 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 6 16441
95 % 1 6 16230
90 % 1 6 14580
70 % 8 16 5156
50 % 11 29 853
40 % 98 213 202
30 % 98 213 211
Entity #2 | Chains: B
Capsid protein VP2 protein, length: 252 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 13119
95 % 1 7 12349
90 % 1 7 12471
70 % 11 31 806
50 % 91 213 199
40 % 91 213 213
30 % 96 226 214
Entity #3 | Chains: C
Capsid protein VP3 protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 6 16709
95 % 1 7 12798
90 % 1 7 12638
70 % 11 31 808
50 % 100 225 179
40 % 100 227 192
30 % 121 268 128
Entity #4 | Chains: D
Capsid protein VP4 protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 38210
95 % 3 8 9947
90 % 10 20 3976
70 % 42 96 640
50 % 76 148 427
40 % 76 148 446
30 % 76 148 463

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4Q4W 1 1 Coxsackievirus capsid protein VP1 138950
2 4Q4X 1 1 Coxsackievirus capsid protein VP1 138950
3 4Q4Y 1 1 Coxsackievirus capsid protein VP1 138950
4 5C8C 1 A VP1 138948
5 1AYM 1 1 HUMAN RHINOVIRUS 16 COAT PROTEIN 169066
6 4WM8 1 A VP1 138951
7 5BNP 1 A Capsid protein VP1 UNP residues 565-861 138951
8 3VBH 1 A Genome Polyprotein, capsid protein VP1 138948
9 1PVC 2 1 POLIOVIRUS TYPE 3, SABIN STRAIN P3/SABIN P3/LEON/12A(1)B 138950
10 5BNO 1 A Capsid protein VP1 UNP residues 565-861 138951
11 1FPN 1 1 COAT PROTEIN VP1 147711
12 5OSN 1 A Capsid protein 12064
13 1ND2 1 A coat protein VP1 147711
14 4WM7 1 A VP1 138951
15 1HXS 1 1 GENOME POLYPROTEIN, COAT PROTEIN VP1 RESIDUES 579-880 138950
16 5BNN 1 A Capsid protein VP1 UNP residues 565-861 138951
17 1NCQ 1 A COAT PROTEIN VP1 147712
18 1D4M 1 1 PROTEIN (COXSACKIEVIRUS A9) VP1 138949
19 4RHV 1 1 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1) 147712
20 1EAH 1 1 POLIOVIRUS TYPE 2 COAT PROTEINS VP1 TO VP4 138950
21 4Q4V 1 1 Coxsackievirus capsid protein VP1 138950
22 1K5M 1 A COAT PROTEIN VP1 (P1D) 147712
23 1QJU 1 1 PROTEIN VP1 RESIDUES 569-853 147711
24 3VBF 1 A Genome Polyprotein, capsid protein VP1 STRAIN FUYANG, ANHUI. P.R.C/17.08/1 138948
25 2PLV 1 1 HUMAN POLIOVIRUS TYPE 1 (SUBUNIT VP1) 138950
26 4PDW 1 A Genome polyprotein resdiues 568-856 147712 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
27 4CDQ 1 A VP1 138948
28 3ZFE 1 A VP1 VIRION OF HUMAN ENTEROVIRUS 71 138948
29 1QJX 1 1 PROTEIN VP1 RESIDUES 569-853 147711
30 1QJY 1 1 PROTEIN VP1 RESIDUES 569-853 147711
31 1NCR 1 A coat protein VP1 147711
32 3VBO 1 A Genome Polyprotein, capsid protein VP1 138948
33 1AYN 1 1 HUMAN RHINOVIRUS 16 COAT PROTEIN 169066
34 1C8M 1 1 HUMAN RHINOVIRUS 16 COAT PROTEIN RESIDUES 569-853 147711
35 1AR7 2 1 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
36 1ND3 1 A coat protein VP1 147711
37 1BEV 1 1 BOVINE ENTEROVIRUS COAT PROTEINS VP1 TO VP4 12064
38 4JGY 1 A Polyprotein, capsid protein VP1 STRAIN NINGBO.CHN/028-2/2009 138948
39 1AL2 2 1 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
40 1PO1 2 1 POLIOVIRUS TYPE 1 MAHONEY 138950
41 1AR9 2 1 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
42 4RQP 1 A, E, I, M, Q Capsid protein VP1 138948
43 5C4W 1 A VP1 138948
44 1H8T 1 A ECHOVIRUS 11 COAT PROTEIN VP1 138949
45 1PO2 2 1 POLIOVIRUS TYPE 1 MAHONEY 138950
46 1ASJ 2 1 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
47 1Z7S 1 1 Human COXSACKIEVIRUS A21 Viral Protein 1 138950
48 1OOP 1 A Coat protein VP1 138949
49 4CDX 1 A VP1 138948
50 4RR3 1 A, E, I, M, Q Capsid protein VP1 138948
51 3VDD 1 A Protein VP1 UNP residues 568-850 147711
52 1NA1 1 A Coat protein VP1 147712
53 5C9A 1 A VP1 138948
54 4CDU 1 A VP1 138948
55 1VBB 2 1 POLIOVIRUS TYPE 3 THE NUMBERING OF THE VP1 RESIDUES HAS BEEN ALTERED TO FACILITATE COMPARISON WITH THE STRUCTURE OF THE MAHONEY STRAIN OF TYPE 1 POLIOVIRUS (PDB ENTRY 2PLV). MAHONEY HAS A TWO RESIDUE INSERTION, RELATIVE TO P3/SABIN, LOCATED IN THE DISORDERED N-TERMINUS OF VP1. THUS THE RESIDUES NUMBERED 24 - 302 IN THIS ENTRY ARE ACTUALLY RESIDUES 22 - 300. 138950
56 1POV 2 1 POLIOVIRUS NATIVE EMPTY CAPSID (TYPE 1) 138950
57 1AR6 2 1 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
58 1AR8 2 1 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
59 4N53 1 A Capsid protein VP1 138948
60 4CDW 1 A VP1 138948
61 4CEY 1 A VP1 138948
62 1VBC 2 1 POLIOVIRUS TYPE 3 THE NUMBERING OF THE VP1 RESIDUES HAS BEEN ALTERED TO FACILITATE COMPARISON WITH THE STRUCTURE OF THE MAHONEY STRAIN OF TYPE 1 POLIOVIRUS (PDB ENTRY 2PLV). MAHONEY HAS A TWO RESIDUE INSERTION, RELATIVE TO P3/SABIN, LOCATED IN THE DISORDERED N-TERMINUS OF VP1. THUS THE RESIDUES NUMBERED 24 - 302 IN THIS ENTRY ARE ACTUALLY RESIDUES 22 - 300. 138950
63 3TN9 1 1 Protein VP1 147711
64 3ZFG 1 A VP1 VIRION OF HUMAN ENTEROVIRUS 71 138948
65 1VBE 2 1 POLIOVIRUS TYPE 3 THE NUMBERING OF THE VP1 RESIDUES HAS BEEN ALTERED TO FACILITATE COMPARISON WITH THE STRUCTURE OF THE MAHONEY STRAIN OF TYPE 1 POLIOVIRUS (PDB ENTRY 2PLV). MAHONEY HAS A TWO RESIDUE INSERTION, RELATIVE TO P3/SABIN, LOCATED IN THE DISORDERED N-TERMINUS OF VP1. THUS THE RESIDUES NUMBERED 24 - 302 IN THIS ENTRY ARE ACTUALLY RESIDUES 22 - 300. 138950
66 4CEW 1 A VP1 138948
67 3VBS 1 A Genome Polyprotein, capsid protein VP1 138948
68 5ABJ 1 A VP1 UNP RESIDUES 566-862 138948
69 1VBD 2 1 POLIOVIRUS TYPE 1 MAHONEY P1/MAHONEY 138950
70 3ZFF 1 A VP1 138948
71 1RHI 1 1 HUMAN RHINOVIRUS 3 COAT PROTEIN 147712
72 1VBA 2 1 POLIOVIRUS TYPE 3 THE NUMBERING OF THE VP1 RESIDUES HAS BEEN ALTERED TO FACILITATE COMPARISON WITH THE STRUCTURE OF THE MAHONEY STRAIN OF TYPE 1 POLIOVIRUS (PDB ENTRY 2PLV). MAHONEY HAS A TWO RESIDUE INSERTION, RELATIVE TO P3/SABIN, LOCATED IN THE DISORDERED N-TERMINUS OF VP1. THUS THE RESIDUES NUMBERED 24 - 302 IN THIS ENTRY ARE ACTUALLY RESIDUES 22 - 300. 138950
73 4JGZ 1 A Polyprotein, capsid protein VP1 STRAIN NINGBO.CHN/028-2/2009 138948
74 1MQT 1 A Polyprotein SVDV COAT PROTEIN VP1 138949
75 1RVF 1 1 HUMAN RHINOVIRUS 14 COAT PROTEIN 147712
76 4GB3 1 1 coat protein 1 UNP residues 571-851 138949
77 2X5I 1 A VP1 138949
78 1PIV 2 1 POLIOVIRUS TYPE 3 (SUBUNIT VP1) 138950
79 1COV 1 1 COXSACKIEVIRUS COAT PROTEIN 138949
80 1R1A 1 1 HUMAN RHINOVIRUS 1A COAT PROTEIN (SUBUNIT VP1) 147711
81 1EV1 1 1 ECHOVIRUS 1 VP1, VP2, VP3, VP4 138949
82 4N43 1 A Capsid protein VP1 EV71 capsid protein VP1 138948
83 4YVS 1 A, D, G, J, M Capsid protein VP1 138948
84 1V9U 1 1 Coat protein VP1 147711
85 4RS5 3 A, D, G, J, M Capsid protein VP1 138948
86 4GMP 2 1 capsid protein VP1 UNP residues 566-862 138948
87 4AED 1 A VP1 138948
88 4YVW 1 A, D, E, J, M Capsid protein VP1 138948
89 3DPR 1 A Protein VP1 147711
90 4L3B 1 A Protein VP1 UNP residues 568-856 147711
91 6SK5 3 A Rhinovirus B5 VP1 147712
92 6SK6 3 A Rhinovirus B5 VP1 147712
93 6SK7 1 A VP1 capsid protein 147711 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
94 6RJF 1 1 VP1 138949
95 6O06 1 A VP1 UNP residues 570-850 138949
96 6MZI 1 A viral protein 1 UNP residues 565-861 138951
97 6I2K 1 A Polyprotein 138948
98 6ILL 1 A Capsid protein VP1 138949
99 6ILM 1 A Capsid protein VP1 138949
100 6ILN 1 A Capsid protein VP1 138949
101 6ILP 1 A Capsid protein VP1 138949
102 6ILJ 1 A Capsid protein VP1 138949
103 6ILK 1 A Capsid protein VP1 138949
104 6IIO 1 A VP1 138948
105 6IIJ 1 A VP1 138948
106 6AKS 1 A VP1 138948
107 6AKT 1 A VP1 138948
108 6AKU 1 A VP1 138948
109 6HHT 1 A1, A2, D1, D2, G1, G2, J1, J2, M1, M2, P1, P2, S1, S2, V1, V2, Y2, b2, e2, h2, k2, n2, q2, t2, w2 Echovirus 18 capsid protein 1 138949
110 6AJ7 3 A Capsid protein VP1 138951
111 6AJ9 5 A Capsid protein VP1 138951
112 6AJ2 1 A Capsid protein VP1 138951 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
113 6AJ3 1 A Capsid protein VP1 138951 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
114 6AJ0 1 A Viral protein 1 138951
115 6HBG 1 A Echovirus 18 viral protein 1 138949 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
116 6HBH 1 A Echovirus 18 capsid protein 1 138949
117 6HBJ 1 A Viral protein 1 138949 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
118 6HBK 1 A, D, G, J, M, P, S, V, Y, b, e Echovirus 18 capsid protein 1 138949
119 6HBL 1 A, D, G, J, M, P, S, V, Y, b, e, h, k, n, q Echovirus 18 capsid protein 1 138949
120 6ACY 1 A VP1 138948
121 6ACZ 1 A VP1 138948
122 6AD0 3 A VP1 138948
123 6AD1 1 A VP1 138948
124 6ACU 1 A VP1 138948
125 6ACW 1 A VP1 138948
126 6GZV 1 A Capsid protein VP1 138949 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
127 6DIZ 1 A VP1 138948
128 6DIJ 1 A VP1 138948
129 6CV1 1 A viral protein 1 UNP residues 565-861 138951
130 6CV2 1 A viral protein 1 UNP residues 565-861 138951
131 6CV3 1 A viral protein 1 UNP residues 565-861 138951
132 6CV4 1 A viral protein 1 UNP residues 565-861 138951
133 6CV5 1 A viral protein 1 UNP residues 565-861 138951
134 6CVB 1 A viral protein 1 UNP residues 565-861 138951
135 6CSA 1 A viral protein 1 UNP residues 565-861 138951
136 6CSG 1 A viral protein 1 UNP residues 565-861 138951
137 6CSH 1 A viral protein 1 UNP residues 565-861 138951
138 6CRP 1 A viral protein 1 UNP residues 565-861 138951
139 6CRR 1 A viral protein 1 UNP residues 565-861 138951
140 6CRS 1 A viral protein 1 UNP residues 565-861 138951
141 6CRU 1 A viral protein 1 UNP residues 565-861 138951
142 6CS3 1 A viral protein 1 UNP residues 565-861 138951
143 6CS4 1 A viral protein 1 UNP residues 565-861 138951
144 6CS5 1 A viral protein 1 UNP residues 565-861 138951
145 6CS6 1 A viral protein 1 UNP residues 565-861 138951
146 5YHQ 1 A Capsid protein VP1 138948
147 6EIT 1 1 VP1 138950
148 5XS4 1 A Genome polyprotein UNP residues 566-870 138948
149 5XS5 1 A Genome polyprotein UNP residue 566-870 138948
150 5XS7 3 A Genome polyprotein UNP residues 566-870 138948
151 5W3L 1 A viral protein 1 UNP residues 568-856 147712
152 5W3M 3 A viral protein 1 UNP residues 568-856 147712
153 5W3O 3 A viral protein 1 UNP residues 568-856 147712
154 5W3E 3 A viral protein 1 UNP residues 568-856 147712
155 5O5P 1 1 Capsid proteins, VP1 138950
156 5O5B 1 1 Capsid proteins 138950
157 5TSK 1 A coxsackievirus A16 empty procapsid VP1 subunit 138948
158 3JD7 1 1 Capsid protein VP1 UNP residues 571-851 138949
159 3JBC 1 1 Capsid protein VP1 UNP residues 580-881 138950
160 3JBD 1 1 Capsid protein VP1 UNP residues 580-881 138950
161 3JBE 1 1 Capsid protein VP1 UNP residues 580-881 138950
162 3JBF 1 1 Capsid protein VP1 UNP residues 580-881 138950
163 3JBG 1 1 Capsid protein VP1 UNP residues 580-881 138950
164 3J9F 1 1 Protein VP1 UNP residues 580-881 138950
165 3J91 2 1 VP1 UNP residues 566-682 138948
166 3J8F 1 1 Capsid protein VP1 UNP residues 580-881 138950
167 4C0U 1 A VP1 138948
168 4C0Y 1 A VP1 138948
169 4C10 3 A VP1 138948
170 3J48 1 1 Protein VP1 UNP residues 580-881 138950
171 3J3O 4 1 Protein VP1 UNP residues 580-881 138950
172 3J3P 3 1 Protein VP1 UNP residues 580-881 138950
173 3IYP 1 A Capsid protein 138949
174 3EPC 2 1 Protein VP1 138950
175 3EPD 3 1 protein VP1 138950
176 3EPF 2 1 Protein VP1 138950
177 2C8I 1 A ECHOVIRUS 11 COAT PROTEIN VP1 138949
178 1Z7Z 1 1 human coxsackievirus A21 Viral Protein 1 residues 1073-1286 138950
179 1UPN 1 A ECHOVIRUS 11 COAT PROTEIN VP1 138949
180 1NN8 2 1 coat protein VP1 138950
181 1M11 2 1 COAT PROTEIN VP1 138949
182 1JEW 2 1 COXSACKIEVIRUS CAPSID, COAT PROTEIN VP1 Residues 571-851 138949
183 1DGI 2 1 VP1 138950
184 1D3E 2 1 PROTEIN (RHINOVIRUS 16 COAT PROTEIN VP1) 169066
185 1D3I 2 1 PROTEIN (RHINOVIRUS 14 COAT PROTEIN VP1) 169066
186 1VRH 1 1 RHINOVIRUS 14 147712
187 1RUC 1 1 RHINOVIRUS 14 147712
188 1RUD 1 1 RHINOVIRUS 14 147712
189 1RUE 1 1 RHINOVIRUS 14 147712
190 1RUF 1 1 RHINOVIRUS 14 147712
191 1RUG 1 1 RHINOVIRUS 14 147712
192 1RUH 1 1 RHINOVIRUS 14 147712
193 1RUI 1 1 RHINOVIRUS 14 147712
194 1RUJ 1 1 RHINOVIRUS 14 147712
195 1HRV 1 1 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1) 147712
196 2HWB 1 1 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1) 147712
197 2HWC 1 1 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1) 147712
198 2HWD 1 1 HUMAN RHINOVIRUS 1A COAT PROTEIN (SUBUNIT VP1) 147711
199 2HWE 1 1 HUMAN RHINOVIRUS 1A COAT PROTEIN (SUBUNIT VP1) 147711
200 2HWF 1 1 HUMAN RHINOVIRUS 1A COAT PROTEIN (SUBUNIT VP1) 147711
201 1HRI 1 1 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1) 147712
202 1R09 1 1 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1) 147712
203 1R08 1 1 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1) 147712
204 1RMU 1 1 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1) 147712
205 2R04 1 1 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1) 147712
206 2R06 1 1 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1) 147712
207 2R07 1 1 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1) 147712
208 2RM2 1 1 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1) 147712
209 2RMU 1 1 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1) 147712
210 2RR1 1 1 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1) 147712
211 2RS1 1 1 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1) 169066
212 2RS3 1 1 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1) 147712
213 2RS5 1 1 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1) 147712