Sequence Similarity Clusters for the Entities in PDB 6ILL

Entity #1 | Chains: A
Capsid protein VP1 protein, length: 273 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 6 16776
95 % 1 6 15081
90 % 1 6 14834
70 % 8 16 5244
50 % 11 29 870
40 % 80 162 260
30 % 106 222 205
Entity #2 | Chains: B
Capsid protein VP2 protein, length: 252 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 13387
95 % 1 7 12953
90 % 1 7 12760
70 % 11 31 824
50 % 99 222 196
40 % 99 222 207
30 % 104 235 213
Entity #3 | Chains: C
Capsid protein VP3 protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 6 14811
95 % 1 7 13021
90 % 1 7 12827
70 % 11 31 818
50 % 108 234 179
40 % 108 236 188
30 % 129 278 127
Entity #4 | Chains: D
Capsid protein VP4 protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 48994
95 % 3 8 10152
90 % 10 20 4021
70 % 42 96 653
50 % 83 154 417
40 % 83 154 435
30 % 83 154 454

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4Q4W 1 1 Coxsackievirus capsid protein VP1 138950
2 4Q4X 1 1 Coxsackievirus capsid protein VP1 138950
3 4Q4Y 1 1 Coxsackievirus capsid protein VP1 138950
4 6T4C 1 A VP1 1330520 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
5 6T48 1 A VP1 1330520 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
6 5C8C 1 A VP1 138948
7 4WM8 1 A VP1 138951
8 5BNP 1 A Capsid protein VP1 UNP residues 565-861 138951
9 3VBH 1 A Genome Polyprotein, capsid protein VP1 138948
10 1PVC 2 1 POLIOVIRUS TYPE 3, SABIN STRAIN P3/SABIN P3/LEON/12A(1)B 138950
11 5BNO 1 A Capsid protein VP1 UNP residues 565-861 138951
12 5OSN 1 A Capsid protein 12064
13 4WM7 1 A VP1 138951
14 1HXS 1 1 GENOME POLYPROTEIN, COAT PROTEIN VP1 RESIDUES 579-880 138950
15 5BNN 1 A Capsid protein VP1 UNP residues 565-861 138951
16 1D4M 1 1 PROTEIN (COXSACKIEVIRUS A9) VP1 138949
17 1EAH 1 1 POLIOVIRUS TYPE 2 COAT PROTEINS VP1 TO VP4 138950
18 4Q4V 1 1 Coxsackievirus capsid protein VP1 138950
19 3VBF 1 A Genome Polyprotein, capsid protein VP1 STRAIN FUYANG, ANHUI. P.R.C/17.08/1 138948
20 2PLV 1 1 HUMAN POLIOVIRUS TYPE 1 (SUBUNIT VP1) 138950
21 4CDQ 1 A VP1 138948
22 3ZFE 1 A VP1 VIRION OF HUMAN ENTEROVIRUS 71 138948
23 3VBO 1 A Genome Polyprotein, capsid protein VP1 138948
24 1AR7 2 1 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
25 1BEV 1 1 BOVINE ENTEROVIRUS COAT PROTEINS VP1 TO VP4 12064
26 4JGY 1 A Polyprotein, capsid protein VP1 STRAIN NINGBO.CHN/028-2/2009 138948
27 1AL2 2 1 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
28 1PO1 2 1 POLIOVIRUS TYPE 1 MAHONEY 138950
29 1AR9 2 1 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
30 4RQP 1 A, E, I, M, Q Capsid protein VP1 138948
31 5C4W 1 A VP1 138948
32 1H8T 1 A ECHOVIRUS 11 COAT PROTEIN VP1 138949
33 1PO2 2 1 POLIOVIRUS TYPE 1 MAHONEY 138950
34 1ASJ 2 1 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
35 1Z7S 1 1 Human COXSACKIEVIRUS A21 Viral Protein 1 138950
36 1OOP 1 A Coat protein VP1 138949
37 4CDX 1 A VP1 138948
38 4RR3 1 A, E, I, M, Q Capsid protein VP1 138948
39 5C9A 1 A VP1 138948
40 4CDU 1 A VP1 138948
41 1VBB 2 1 POLIOVIRUS TYPE 3 THE NUMBERING OF THE VP1 RESIDUES HAS BEEN ALTERED TO FACILITATE COMPARISON WITH THE STRUCTURE OF THE MAHONEY STRAIN OF TYPE 1 POLIOVIRUS (PDB ENTRY 2PLV). MAHONEY HAS A TWO RESIDUE INSERTION, RELATIVE TO P3/SABIN, LOCATED IN THE DISORDERED N-TERMINUS OF VP1. THUS THE RESIDUES NUMBERED 24 - 302 IN THIS ENTRY ARE ACTUALLY RESIDUES 22 - 300. 138950
42 1POV 2 1 POLIOVIRUS NATIVE EMPTY CAPSID (TYPE 1) 138950
43 1AR6 2 1 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
44 1AR8 2 1 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
45 4N53 1 A Capsid protein VP1 138948
46 4CDW 1 A VP1 138948
47 4CEY 1 A VP1 138948
48 1VBC 2 1 POLIOVIRUS TYPE 3 THE NUMBERING OF THE VP1 RESIDUES HAS BEEN ALTERED TO FACILITATE COMPARISON WITH THE STRUCTURE OF THE MAHONEY STRAIN OF TYPE 1 POLIOVIRUS (PDB ENTRY 2PLV). MAHONEY HAS A TWO RESIDUE INSERTION, RELATIVE TO P3/SABIN, LOCATED IN THE DISORDERED N-TERMINUS OF VP1. THUS THE RESIDUES NUMBERED 24 - 302 IN THIS ENTRY ARE ACTUALLY RESIDUES 22 - 300. 138950
49 3ZFG 1 A VP1 VIRION OF HUMAN ENTEROVIRUS 71 138948
50 1VBE 2 1 POLIOVIRUS TYPE 3 THE NUMBERING OF THE VP1 RESIDUES HAS BEEN ALTERED TO FACILITATE COMPARISON WITH THE STRUCTURE OF THE MAHONEY STRAIN OF TYPE 1 POLIOVIRUS (PDB ENTRY 2PLV). MAHONEY HAS A TWO RESIDUE INSERTION, RELATIVE TO P3/SABIN, LOCATED IN THE DISORDERED N-TERMINUS OF VP1. THUS THE RESIDUES NUMBERED 24 - 302 IN THIS ENTRY ARE ACTUALLY RESIDUES 22 - 300. 138950
51 4CEW 1 A VP1 138948
52 3VBS 1 A Genome Polyprotein, capsid protein VP1 138948
53 5ABJ 1 A VP1 UNP RESIDUES 566-862 138948
54 1VBD 2 1 POLIOVIRUS TYPE 1 MAHONEY P1/MAHONEY 138950
55 3ZFF 1 A VP1 138948
56 1VBA 2 1 POLIOVIRUS TYPE 3 THE NUMBERING OF THE VP1 RESIDUES HAS BEEN ALTERED TO FACILITATE COMPARISON WITH THE STRUCTURE OF THE MAHONEY STRAIN OF TYPE 1 POLIOVIRUS (PDB ENTRY 2PLV). MAHONEY HAS A TWO RESIDUE INSERTION, RELATIVE TO P3/SABIN, LOCATED IN THE DISORDERED N-TERMINUS OF VP1. THUS THE RESIDUES NUMBERED 24 - 302 IN THIS ENTRY ARE ACTUALLY RESIDUES 22 - 300. 138950
57 4JGZ 1 A Polyprotein, capsid protein VP1 STRAIN NINGBO.CHN/028-2/2009 138948
58 1MQT 1 A Polyprotein SVDV COAT PROTEIN VP1 138949
59 4GB3 1 1 coat protein 1 UNP residues 571-851 138949
60 2X5I 1 A VP1 138949
61 1PIV 2 1 POLIOVIRUS TYPE 3 (SUBUNIT VP1) 138950
62 1COV 1 1 COXSACKIEVIRUS COAT PROTEIN 138949
63 1EV1 1 1 ECHOVIRUS 1 VP1, VP2, VP3, VP4 138949
64 4N43 1 A Capsid protein VP1 EV71 capsid protein VP1 138948
65 4YVS 1 A, D, G, J, M Capsid protein VP1 138948
66 4RS5 3 A, D, G, J, M Capsid protein VP1 138948
67 4GMP 2 1 capsid protein VP1 UNP residues 566-862 138948
68 4AED 1 A VP1 138948
69 4YVW 1 A, D, E, J, M Capsid protein VP1 138948
70 6UH1 1 A VP1 138948
71 6UH6 1 A VP1 138948
72 6UH7 1 A VP1 138948
73 6SNW 1 A Capsid protein VP1 138948 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
74 6SNB 1 A Capsid protein VP1 138948 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
75 6SMG 1 A Capsid protein VP1 138948 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
76 6RJF 1 1 VP1 138949
77 6O06 1 A VP1 UNP residues 570-850 138949
78 6MZI 1 A viral protein 1 UNP residues 565-861 138951
79 6I2K 1 A Polyprotein 138948
80 6ILL 1 A Capsid protein VP1 138949
81 6ILM 1 A Capsid protein VP1 138949
82 6ILN 1 A Capsid protein VP1 138949
83 6ILP 1 A Capsid protein VP1 138949
84 6ILJ 1 A Capsid protein VP1 138949
85 6ILK 1 A Capsid protein VP1 138949
86 6IIO 1 A VP1 138948
87 6IIJ 1 A VP1 138948
88 6AKS 1 A VP1 138948
89 6AKT 1 A VP1 138948
90 6AKU 1 A VP1 138948
91 6HHT 1 A1, A2, D1, D2, G1, G2, J1, J2, M1, M2, P1, P2, S1, S2, V1, V2, Y2, b2, e2, h2, k2, n2, q2, t2, w2 Echovirus 18 capsid protein 1 138949
92 6AJ7 3 A Capsid protein VP1 138951
93 6AJ9 5 A Capsid protein VP1 138951
94 6AJ2 1 A Capsid protein VP1 138951 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
95 6AJ3 1 A Capsid protein VP1 138951 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
96 6AJ0 1 A Viral protein 1 138951
97 6HBG 1 A Echovirus 18 viral protein 1 138949 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
98 6HBH 1 A Echovirus 18 capsid protein 1 138949
99 6HBJ 1 A Viral protein 1 138949 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
100 6HBK 1 A, D, G, J, M, P, S, V, Y, b, e Echovirus 18 capsid protein 1 138949
101 6HBL 1 A, D, G, J, M, P, S, V, Y, b, e, h, k, n, q Echovirus 18 capsid protein 1 138949
102 6ACY 1 A VP1 138948
103 6ACZ 1 A VP1 138948
104 6AD0 3 A VP1 138948
105 6AD1 1 A VP1 138948
106 6ACU 1 A VP1 138948
107 6ACW 1 A VP1 138948
108 6GZV 1 A Capsid protein VP1 138949 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
109 6DIZ 1 A VP1 138948
110 5ZUD 1 A Capsid protein VP1 138948
111 5ZUF 1 A Capsid protein VP1 138948
112 6CV1 1 A viral protein 1 UNP residues 565-861 138951
113 6CV2 1 A viral protein 1 UNP residues 565-861 138951
114 6CV3 1 A viral protein 1 UNP residues 565-861 138951
115 6CV4 1 A viral protein 1 UNP residues 565-861 138951
116 6CV5 1 A viral protein 1 UNP residues 565-861 138951
117 6CVB 1 A viral protein 1 UNP residues 565-861 138951
118 6CSA 1 A viral protein 1 UNP residues 565-861 138951
119 6CSG 1 A viral protein 1 UNP residues 565-861 138951
120 6CSH 1 A viral protein 1 UNP residues 565-861 138951
121 6CRP 1 A viral protein 1 UNP residues 565-861 138951
122 6CRR 1 A viral protein 1 UNP residues 565-861 138951
123 6CRS 1 A viral protein 1 UNP residues 565-861 138951
124 6CRU 1 A viral protein 1 UNP residues 565-861 138951
125 6CS3 1 A viral protein 1 UNP residues 565-861 138951
126 6CS4 1 A viral protein 1 UNP residues 565-861 138951
127 6CS5 1 A viral protein 1 UNP residues 565-861 138951
128 6CS6 1 A viral protein 1 UNP residues 565-861 138951
129 5YHQ 1 A Capsid protein VP1 138948
130 6EIT 1 1 VP1 138950
131 5XS4 1 A Genome polyprotein UNP residues 566-870 138948
132 5XS5 1 A Genome polyprotein UNP residue 566-870 138948
133 5XS7 3 A Genome polyprotein UNP residues 566-870 138948
134 5O5P 1 1 Capsid proteins, VP1 138950
135 5O5B 1 1 Capsid proteins 138950
136 5TSK 1 A coxsackievirus A16 empty procapsid VP1 subunit 138948
137 3JD7 1 1 Capsid protein VP1 UNP residues 571-851 138949
138 3JBC 1 1 Capsid protein VP1 UNP residues 580-881 138950
139 3JBD 1 1 Capsid protein VP1 UNP residues 580-881 138950
140 3JBE 1 1 Capsid protein VP1 UNP residues 580-881 138950
141 3JBF 1 1 Capsid protein VP1 UNP residues 580-881 138950
142 3JBG 1 1 Capsid protein VP1 UNP residues 580-881 138950
143 3J9F 1 1 Protein VP1 UNP residues 580-881 138950
144 3J91 2 1 VP1 UNP residues 566-682 138948
145 3J8F 1 1 Capsid protein VP1 UNP residues 580-881 138950
146 4C0U 1 A VP1 138948
147 4C0Y 1 A VP1 138948
148 4C10 3 A VP1 138948
149 3J48 1 1 Protein VP1 UNP residues 580-881 138950
150 3J3O 4 1 Protein VP1 UNP residues 580-881 138950
151 3J3P 3 1 Protein VP1 UNP residues 580-881 138950
152 3IYP 1 A Capsid protein 138949
153 3EPC 2 1 Protein VP1 138950
154 3EPD 3 1 protein VP1 138950
155 3EPF 2 1 Protein VP1 138950
156 2C8I 1 A ECHOVIRUS 11 COAT PROTEIN VP1 138949
157 1Z7Z 1 1 human coxsackievirus A21 Viral Protein 1 residues 1073-1286 138950
158 1UPN 1 A ECHOVIRUS 11 COAT PROTEIN VP1 138949
159 1NN8 2 1 coat protein VP1 138950
160 1M11 2 1 COAT PROTEIN VP1 138949
161 1JEW 2 1 COXSACKIEVIRUS CAPSID, COAT PROTEIN VP1 Residues 571-851 138949
162 1DGI 2 1 VP1 138950