Sequence Similarity Clusters for the Entities in PDB 6ILL

Entity #1 | Chains: A
Capsid protein VP1 protein, length: 273 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 6 15327
95 % 1 6 14680
90 % 1 6 14444
70 % 8 16 4806
50 % 11 29 833
40 % 87 167 233
30 % 94 206 211
Entity #2 | Chains: B
Capsid protein VP2 protein, length: 252 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 12534
95 % 1 7 12332
90 % 1 7 12200
70 % 11 31 758
50 % 87 204 202
40 % 87 204 214
30 % 92 217 215
Entity #3 | Chains: C
Capsid protein VP3 protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 6 13213
95 % 1 7 11980
90 % 1 7 11749
70 % 11 31 760
50 % 96 216 180
40 % 96 218 191
30 % 117 259 129
Entity #4 | Chains: D
Capsid protein VP4 protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 46630
95 % 3 8 9648
90 % 10 20 3817
70 % 29 79 764
50 % 72 141 431
40 % 72 141 452
30 % 72 141 473

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

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ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4Q4W 1 1 Coxsackievirus capsid protein VP1 138950
2 4Q4X 1 1 Coxsackievirus capsid protein VP1 138950
3 4Q4Y 1 1 Coxsackievirus capsid protein VP1 138950
4 5C8C 1 A VP1 138948
5 1AYM 1 1 HUMAN RHINOVIRUS 16 COAT PROTEIN 169066
6 4WM8 1 A VP1 138951
7 5BNP 1 A Capsid protein VP1 UNP residues 565-861 138951
8 3VBH 1 A Genome Polyprotein, capsid protein VP1 138948
9 1PVC 2 1 POLIOVIRUS TYPE 3, SABIN STRAIN P3/SABIN P3/LEON/12A(1)B 138950
10 5BNO 1 A Capsid protein VP1 UNP residues 565-861 138951
11 1FPN 1 1 COAT PROTEIN VP1 147711
12 1ND2 1 A coat protein VP1 147711
13 4WM7 1 A VP1 138951
14 1HXS 1 1 GENOME POLYPROTEIN, COAT PROTEIN VP1 RESIDUES 579-880 138950
15 5BNN 1 A Capsid protein VP1 UNP residues 565-861 138951
16 1D4M 1 1 PROTEIN (COXSACKIEVIRUS A9) VP1 138949
17 1EAH 1 1 POLIOVIRUS TYPE 2 COAT PROTEINS VP1 TO VP4 138950
18 4Q4V 1 1 Coxsackievirus capsid protein VP1 138950
19 1QJU 1 1 PROTEIN VP1 RESIDUES 569-853 147711
20 3VBF 1 A Genome Polyprotein, capsid protein VP1 STRAIN FUYANG, ANHUI. P.R.C/17.08/1 138948
21 2PLV 1 1 HUMAN POLIOVIRUS TYPE 1 (SUBUNIT VP1) 138950
22 4CDQ 1 A VP1 138948
23 3ZFE 1 A VP1 VIRION OF HUMAN ENTEROVIRUS 71 138948
24 1QJX 1 1 PROTEIN VP1 RESIDUES 569-853 147711
25 1QJY 1 1 PROTEIN VP1 RESIDUES 569-853 147711
26 1NCR 1 A coat protein VP1 147711
27 3VBO 1 A Genome Polyprotein, capsid protein VP1 138948
28 1AYN 1 1 HUMAN RHINOVIRUS 16 COAT PROTEIN 169066
29 1C8M 1 1 HUMAN RHINOVIRUS 16 COAT PROTEIN RESIDUES 569-853 147711
30 1AR7 2 1 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
31 1ND3 1 A coat protein VP1 147711
32 1BEV 1 1 BOVINE ENTEROVIRUS COAT PROTEINS VP1 TO VP4 12064
33 4JGY 1 A Polyprotein, capsid protein VP1 STRAIN NINGBO.CHN/028-2/2009 138948
34 1AL2 2 1 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
35 1PO1 2 1 POLIOVIRUS TYPE 1 MAHONEY 138950
36 1AR9 2 1 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
37 4RQP 1 A, E, I, M, Q Capsid protein VP1 138948
38 5C4W 1 A VP1 138948
39 1H8T 1 A ECHOVIRUS 11 COAT PROTEIN VP1 138949
40 1PO2 2 1 POLIOVIRUS TYPE 1 MAHONEY 138950
41 1ASJ 2 1 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
42 1Z7S 1 1 Human COXSACKIEVIRUS A21 Viral Protein 1 138950
43 1OOP 1 A Coat protein VP1 138949
44 4CDX 1 A VP1 138948
45 4RR3 1 A, E, I, M, Q Capsid protein VP1 138948
46 3VDD 1 A Protein VP1 UNP residues 568-850 147711
47 5C9A 1 A VP1 138948
48 4CDU 1 A VP1 138948
49 1VBB 2 1 POLIOVIRUS TYPE 3 THE NUMBERING OF THE VP1 RESIDUES HAS BEEN ALTERED TO FACILITATE COMPARISON WITH THE STRUCTURE OF THE MAHONEY STRAIN OF TYPE 1 POLIOVIRUS (PDB ENTRY 2PLV). MAHONEY HAS A TWO RESIDUE INSERTION, RELATIVE TO P3/SABIN, LOCATED IN THE DISORDERED N-TERMINUS OF VP1. THUS THE RESIDUES NUMBERED 24 - 302 IN THIS ENTRY ARE ACTUALLY RESIDUES 22 - 300. 138950
50 1POV 2 1 POLIOVIRUS NATIVE EMPTY CAPSID (TYPE 1) 138950
51 1AR6 2 1 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
52 1AR8 2 1 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
53 4N53 1 A Capsid protein VP1 138948
54 4CDW 1 A VP1 138948
55 4CEY 1 A VP1 138948
56 1VBC 2 1 POLIOVIRUS TYPE 3 THE NUMBERING OF THE VP1 RESIDUES HAS BEEN ALTERED TO FACILITATE COMPARISON WITH THE STRUCTURE OF THE MAHONEY STRAIN OF TYPE 1 POLIOVIRUS (PDB ENTRY 2PLV). MAHONEY HAS A TWO RESIDUE INSERTION, RELATIVE TO P3/SABIN, LOCATED IN THE DISORDERED N-TERMINUS OF VP1. THUS THE RESIDUES NUMBERED 24 - 302 IN THIS ENTRY ARE ACTUALLY RESIDUES 22 - 300. 138950
57 3TN9 1 1 Protein VP1 147711
58 3ZFG 1 A VP1 VIRION OF HUMAN ENTEROVIRUS 71 138948
59 1VBE 2 1 POLIOVIRUS TYPE 3 THE NUMBERING OF THE VP1 RESIDUES HAS BEEN ALTERED TO FACILITATE COMPARISON WITH THE STRUCTURE OF THE MAHONEY STRAIN OF TYPE 1 POLIOVIRUS (PDB ENTRY 2PLV). MAHONEY HAS A TWO RESIDUE INSERTION, RELATIVE TO P3/SABIN, LOCATED IN THE DISORDERED N-TERMINUS OF VP1. THUS THE RESIDUES NUMBERED 24 - 302 IN THIS ENTRY ARE ACTUALLY RESIDUES 22 - 300. 138950
60 4CEW 1 A VP1 138948
61 3VBS 1 A Genome Polyprotein, capsid protein VP1 138948
62 5ABJ 1 A VP1 UNP RESIDUES 566-862 138948
63 1VBD 2 1 POLIOVIRUS TYPE 1 MAHONEY P1/MAHONEY 138950
64 3ZFF 1 A VP1 138948
65 1VBA 2 1 POLIOVIRUS TYPE 3 THE NUMBERING OF THE VP1 RESIDUES HAS BEEN ALTERED TO FACILITATE COMPARISON WITH THE STRUCTURE OF THE MAHONEY STRAIN OF TYPE 1 POLIOVIRUS (PDB ENTRY 2PLV). MAHONEY HAS A TWO RESIDUE INSERTION, RELATIVE TO P3/SABIN, LOCATED IN THE DISORDERED N-TERMINUS OF VP1. THUS THE RESIDUES NUMBERED 24 - 302 IN THIS ENTRY ARE ACTUALLY RESIDUES 22 - 300. 138950
66 4JGZ 1 A Polyprotein, capsid protein VP1 STRAIN NINGBO.CHN/028-2/2009 138948
67 1MQT 1 A Polyprotein SVDV COAT PROTEIN VP1 138949
68 4GB3 1 1 coat protein 1 UNP residues 571-851 138949
69 2X5I 1 A VP1 138949
70 1PIV 2 1 POLIOVIRUS TYPE 3 (SUBUNIT VP1) 138950
71 1COV 1 1 COXSACKIEVIRUS COAT PROTEIN 138949
72 1R1A 1 1 HUMAN RHINOVIRUS 1A COAT PROTEIN (SUBUNIT VP1) 147711
73 1EV1 1 1 ECHOVIRUS 1 VP1, VP2, VP3, VP4 138949
74 4N43 1 A Capsid protein VP1 EV71 capsid protein VP1 138948
75 4YVS 1 A, D, G, J, M Capsid protein VP1 138948
76 1V9U 1 1 Coat protein VP1 147711
77 4RS5 3 A, D, G, J, M Capsid protein VP1 138948
78 4GMP 2 1 capsid protein VP1 UNP residues 566-862 138948
79 4AED 1 A VP1 138948
80 4YVW 1 A, D, E, J, M Capsid protein VP1 138948
81 3DPR 1 A Protein VP1 147711
82 4L3B 1 A Protein VP1 UNP residues 568-856 147711
83 6RJF 1 1 VP1 138949
84 6O06 1 A VP1 UNP residues 570-850 138949
85 6MZI 1 A viral protein 1 UNP residues 565-861 138951
86 6I2K 1 A Polyprotein 138948
87 6ILL 1 A Capsid protein VP1 138949
88 6ILM 1 A Capsid protein VP1 138949
89 6ILN 1 A Capsid protein VP1 138949
90 6ILP 1 A Capsid protein VP1 138949
91 6ILJ 1 A Capsid protein VP1 138949
92 6ILK 1 A Capsid protein VP1 138949
93 6IIO 1 A VP1 138948
94 6IIJ 1 A VP1 138948
95 6AKS 1 A VP1 138948
96 6AKT 1 A VP1 138948
97 6AKU 1 A VP1 138948
98 6HHT 1 A1, A2, D1, D2, G1, G2, J1, J2, M1, M2, P1, P2, S1, S2, V1, V2, Y2, b2, e2, h2, k2, n2, q2, t2, w2 Echovirus 18 capsid protein 1 138949
99 6AJ7 3 A Capsid protein VP1 138951
100 6AJ9 5 A Capsid protein VP1 138951
101 6AJ2 1 A Capsid protein VP1 138951 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
102 6AJ3 1 A Capsid protein VP1 138951 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
103 6AJ0 1 A Viral protein 1 138951
104 6HBG 1 A Echovirus 18 viral protein 1 138949 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
105 6HBH 1 A Echovirus 18 capsid protein 1 138949
106 6HBJ 1 A Viral protein 1 138949 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
107 6HBK 1 A, D, G, J, M, P, S, V, Y, b, e Echovirus 18 capsid protein 1 138949
108 6HBL 1 A, D, G, J, M, P, S, V, Y, b, e, h, k, n, q Echovirus 18 capsid protein 1 138949
109 6ACY 1 A VP1 138948
110 6ACZ 1 A VP1 138948
111 6AD0 3 A VP1 138948
112 6AD1 1 A VP1 138948
113 6ACU 1 A VP1 138948
114 6ACW 1 A VP1 138948
115 6GZV 1 A Capsid protein VP1 138949 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
116 6DIZ 1 A VP1 138948
117 6DIJ 1 A VP1 138948
118 6CSA 1 A viral protein 1 UNP residues 565-861 138951
119 6CSG 1 A viral protein 1 UNP residues 565-861 138951
120 6CSH 1 A viral protein 1 UNP residues 565-861 138951
121 6CRP 1 A viral protein 1 UNP residues 565-861 138951
122 6CRR 1 A viral protein 1 UNP residues 565-861 138951
123 6CRS 1 A viral protein 1 UNP residues 565-861 138951
124 6CRU 1 A viral protein 1 UNP residues 565-861 138951
125 6CS3 1 A viral protein 1 UNP residues 565-861 138951
126 6CS4 1 A viral protein 1 UNP residues 565-861 138951
127 6CS5 1 A viral protein 1 UNP residues 565-861 138951
128 6CS6 1 A viral protein 1 UNP residues 565-861 138951
129 5YHQ 1 A Capsid protein VP1 138948
130 6EIT 1 1 VP1 138950
131 5OSN 1 A Capsid protein 12064
132 5XS4 1 A Genome polyprotein UNP residues 566-870 138948
133 5XS5 1 A Genome polyprotein UNP residue 566-870 138948
134 5XS7 3 A Genome polyprotein UNP residues 566-870 138948
135 5O5P 1 1 Capsid proteins, VP1 138950
136 5O5B 1 1 Capsid proteins 138950
137 5TSK 1 A coxsackievirus A16 empty procapsid VP1 subunit 138948
138 3JD7 1 1 Capsid protein VP1 UNP residues 571-851 138949
139 3JBC 1 1 Capsid protein VP1 UNP residues 580-881 138950
140 3JBD 1 1 Capsid protein VP1 UNP residues 580-881 138950
141 3JBE 1 1 Capsid protein VP1 UNP residues 580-881 138950
142 3JBF 1 1 Capsid protein VP1 UNP residues 580-881 138950
143 3JBG 1 1 Capsid protein VP1 UNP residues 580-881 138950
144 3J9F 1 1 Protein VP1 UNP residues 580-881 138950
145 3J91 2 1 VP1 UNP residues 566-682 138948
146 3J8F 1 1 Capsid protein VP1 UNP residues 580-881 138950
147 4C0U 1 A VP1 138948
148 4C0Y 1 A VP1 138948
149 4C10 3 A VP1 138948
150 3J48 1 1 Protein VP1 UNP residues 580-881 138950
151 3J3O 4 1 Protein VP1 UNP residues 580-881 138950
152 3J3P 3 1 Protein VP1 UNP residues 580-881 138950
153 3IYP 1 A Capsid protein 138949
154 3EPC 2 1 Protein VP1 138950
155 3EPD 3 1 protein VP1 138950
156 3EPF 2 1 Protein VP1 138950
157 2C8I 1 A ECHOVIRUS 11 COAT PROTEIN VP1 138949
158 1Z7Z 1 1 human coxsackievirus A21 Viral Protein 1 residues 1073-1286 138950
159 1UPN 1 A ECHOVIRUS 11 COAT PROTEIN VP1 138949
160 1NN8 2 1 coat protein VP1 138950
161 1M11 2 1 COAT PROTEIN VP1 138949
162 1JEW 2 1 COXSACKIEVIRUS CAPSID, COAT PROTEIN VP1 Residues 571-851 138949
163 1DGI 2 1 VP1 138950
164 1D3E 2 1 PROTEIN (RHINOVIRUS 16 COAT PROTEIN VP1) 169066
165 2HWD 1 1 HUMAN RHINOVIRUS 1A COAT PROTEIN (SUBUNIT VP1) 147711
166 2HWE 1 1 HUMAN RHINOVIRUS 1A COAT PROTEIN (SUBUNIT VP1) 147711
167 2HWF 1 1 HUMAN RHINOVIRUS 1A COAT PROTEIN (SUBUNIT VP1) 147711