Sequence Similarity Clusters for the Entities in PDB 6ILL

Entity #1 | Chains: A
Capsid protein VP1 protein, length: 273 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 6 13737
95 % 1 6 13504
90 % 1 6 14562
70 % 8 16 4953
50 % 11 29 849
40 % 98 213 201
30 % 98 215 211
Entity #2 | Chains: B
Capsid protein VP2 protein, length: 252 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 12935
95 % 1 7 12767
90 % 1 7 12592
70 % 11 31 804
50 % 91 213 197
40 % 91 213 214
30 % 96 226 215
Entity #3 | Chains: C
Capsid protein VP3 protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 6 16089
95 % 1 7 12768
90 % 1 7 12593
70 % 11 31 805
50 % 8 23 931
40 % 100 227 192
30 % 121 268 126
Entity #4 | Chains: D
Capsid protein VP4 protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 47719
95 % 3 8 9936
90 % 10 20 3955
70 % 42 96 631
50 % 76 148 423
40 % 76 148 443
30 % 76 148 460

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1D4M 1 1 PROTEIN (COXSACKIEVIRUS A9) VP1 138949
2 1H8T 1 A ECHOVIRUS 11 COAT PROTEIN VP1 138949
3 1OOP 1 A Coat protein VP1 138949
4 1MQT 1 A Polyprotein SVDV COAT PROTEIN VP1 138949
5 4GB3 1 1 coat protein 1 UNP residues 571-851 138949
6 2X5I 1 A VP1 138949
7 1COV 1 1 COXSACKIEVIRUS COAT PROTEIN 138949
8 1EV1 1 1 ECHOVIRUS 1 VP1, VP2, VP3, VP4 138949
9 6RJF 1 1 VP1 138949
10 6O06 1 A VP1 UNP residues 570-850 138949
11 6ILL 1 A Capsid protein VP1 138949
12 6ILM 1 A Capsid protein VP1 138949
13 6ILN 1 A Capsid protein VP1 138949
14 6ILP 1 A Capsid protein VP1 138949
15 6ILJ 1 A Capsid protein VP1 138949
16 6ILK 1 A Capsid protein VP1 138949
17 6HHT 1 A1, A2, D1, D2, G1, G2, J1, J2, M1, M2, P1, P2, S1, S2, V1, V2, Y2, b2, e2, h2, k2, n2, q2, t2, w2 Echovirus 18 capsid protein 1 138949
18 6HBG 1 A Echovirus 18 viral protein 1 138949 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
19 6HBH 1 A Echovirus 18 capsid protein 1 138949
20 6HBJ 1 A Viral protein 1 138949 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
21 6HBK 1 A, D, G, J, M, P, S, V, Y, b, e Echovirus 18 capsid protein 1 138949
22 6HBL 1 A, D, G, J, M, P, S, V, Y, b, e, h, k, n, q Echovirus 18 capsid protein 1 138949
23 6GZV 1 A Capsid protein VP1 138949 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
24 3JD7 1 1 Capsid protein VP1 UNP residues 571-851 138949
25 3IYP 1 A Capsid protein 138949
26 2C8I 1 A ECHOVIRUS 11 COAT PROTEIN VP1 138949
27 1UPN 1 A ECHOVIRUS 11 COAT PROTEIN VP1 138949
28 1M11 2 1 COAT PROTEIN VP1 138949
29 1JEW 2 1 COXSACKIEVIRUS CAPSID, COAT PROTEIN VP1 Residues 571-851 138949