6ILL

Cryo-EM structure of Echovirus 6 complexed with its uncoating receptor FcRn at PH 5.5


Sequence Similarity Clusters for the Entities in PDB 6ILL

Entity #1 | Chains: A
Capsid protein VP1 protein, length: 273 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 6 15635
95 % 1 6 16211
90 % 1 6 15912
70 % 8 16 5330
50 % 11 29 928
40 % 129 245 187
30 % 131 249 193
Entity #2 | Chains: B
Capsid protein VP2 protein, length: 252 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 14087
95 % 1 7 13152
90 % 1 7 13008
70 % 11 31 877
50 % 123 246 191
40 % 123 246 204
30 % 128 259 209
Entity #3 | Chains: C
Capsid protein VP3 protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 6 17934
95 % 1 7 13655
90 % 1 7 13478
70 % 11 31 875
50 % 8 23 1033
40 % 132 260 184
30 % 153 302 127
Entity #4 | Chains: D
Capsid protein VP4 protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 56372
95 % 3 8 10624
90 % 10 20 4250
70 % 42 96 697
50 % 96 167 403
40 % 96 167 432
30 % 96 167 447

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1OOP 1 A Coat protein VP1 138949
2 1MQT 1 A Polyprotein SVDV COAT PROTEIN VP1 138949
3 4GB3 1 1 coat protein 1 UNP residues 571-851 138949
4 1COV 1 1 COXSACKIEVIRUS COAT PROTEIN 138949
5 1EV1 1 1 ECHOVIRUS 1 VP1, VP2, VP3, VP4 138949
6 6RJF 1 1 VP1 138949
7 6O06 1 A VP1 UNP residues 570-850 138949
8 6ILL 1 A Capsid protein VP1 138949
9 6ILM 1 A Capsid protein VP1 138949
10 6ILN 1 A Capsid protein VP1 138949
11 6ILP 1 A Capsid protein VP1 138949
12 6ILJ 1 A Capsid protein VP1 138949
13 6ILK 1 A Capsid protein VP1 138949
14 6GZV 1 A Capsid protein VP1 138949 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
15 3JD7 1 1 Capsid protein VP1 UNP residues 571-851 138949
16 1JEW 2 1 COXSACKIEVIRUS CAPSID, COAT PROTEIN VP1 Residues 571-851 138949