6ILL

Cryo-EM structure of Echovirus 6 complexed with its uncoating receptor FcRn at PH 5.5


Sequence Similarity Clusters for the Entities in PDB 6ILL

Entity #1 | Chains: A
Capsid protein VP1 protein, length: 273 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 6 17566
95 % 1 6 17250
90 % 1 6 15512
70 % 8 16 5529
50 % 11 29 944
40 % 63 134 390
30 % 120 238 204
Entity #2 | Chains: B
Capsid protein VP2 protein, length: 252 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 14012
95 % 1 7 13581
90 % 1 7 13419
70 % 11 31 870
50 % 112 235 202
40 % 112 235 213
30 % 117 248 212
Entity #3 | Chains: C
Capsid protein VP3 protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 6 17852
95 % 1 7 13582
90 % 1 7 13420
70 % 11 31 871
50 % 119 245 177
40 % 121 249 187
30 % 121 249 195
Entity #4 | Chains: D
Capsid protein VP4 protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 56187
95 % 3 8 10562
90 % 10 20 4221
70 % 42 96 691
50 % 90 161 419
40 % 90 161 446
30 % 90 161 464

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

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Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4Q4W 2 2 Coxsackievirus capsid protein VP2 138950
2 4Q4X 2 2 Coxsackievirus capsid protein VP2 138950
3 4Q4Y 2 2 Coxsackievirus capsid protein VP2 138950
4 6T4C 2 B VP2 1330520 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
5 6T48 2 B VP2 1330520 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
6 1AYM 2 2 HUMAN RHINOVIRUS 16 COAT PROTEIN 169066
7 4WM8 2 B VP2 138951
8 5BNP 2 B Capsid protein VP2 UNP residues 70-317 138951
9 3VBH 2 B Genome polyprotein, capsid protein VP2 138948
10 1PVC 3 2 POLIOVIRUS TYPE 3, SABIN STRAIN P3/SABIN P3/LEON/12A(1)B 138950
11 5BNO 2 B Capsid protein VP2 UNP residues 70-317 138951
12 1FPN 2 2 COAT PROTEIN VP2 147711
13 5OSN 2 B Capsid protein 12064
14 1ND2 2 B coat protein VP2 147711
15 4WM7 2 B VP2 138951
16 1HXS 2 2 GENOME POLYPROTEIN, COAT PROTEIN VP2 RESIDUES 69-340 138950
17 5BNN 2 B Capsid protein VP2 UNP residues 70-317 138951
18 5CFD 3 C VP2 1821750
19 1NCQ 2 B COAT PROTEIN VP2 147712
20 5CFC 3 C VP2 residues 154-411 1821750
21 3CJI 3 C Polyprotein sequence database residues 435-673 390157
22 1D4M 2 2 PROTEIN (COXSACKIEVIRUS A9) VP2 138949
23 4RHV 2 2 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP2) 147712
24 1EAH 2 2 POLIOVIRUS TYPE 2 COAT PROTEINS VP1 TO VP4 138950
25 4Q4V 2 2 Coxsackievirus capsid protein VP2 138950
26 1K5M 2 B CHIMERA OF HRV14 COAT PROTEIN VP2 (P1B) AND the V3 loop of HIV-1 gp120 THE CHIMERA CONSISTS OF THE HRV14 COAT PROTEIN VP2 (P1B) AND RESIDUES 314-325 OF HIV-1 gp120. 147712
27 1QJU 2 2 PROTEIN VP2 RESIDUES 70-330 147711
28 3VBF 2 B Genome Polyprotein, capsid protein VP2 STRAIN FUYANG, ANHUI. P.R.C/17.08/1 138948
29 2PLV 2 2 HUMAN POLIOVIRUS TYPE 1 (SUBUNIT VP2) 138950
30 4PDW 2 B Genome polyprotein resdiues 70-331 147712 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
31 4CDQ 2 B VP2 138948
32 3ZFE 2 B VP2 VIRION OF HUMAN ENTEROVIRUS 71 138948
33 1QJX 2 2 PROTEIN VP2 RESIDUES 70-330 147711
34 1QJY 2 2 PROTEIN VP2 RESIDUES 70-330 147711
35 1NCR 2 B coat protein VP2 147711
36 3VBO 2 B Genome Polyprotein, capsid protein VP2 138948
37 1AYN 2 2 HUMAN RHINOVIRUS 16 COAT PROTEIN 169066
38 1C8M 2 2 HUMAN RHINOVIRUS 16 COAT PROTEIN RESIDUES 79-330 147711
39 2MEV 2 2 MENGO VIRUS COAT PROTEIN (SUBUNIT VP2) 1821749
40 1AR7 3 2 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
41 1ND3 2 B coat protein VP2 147711
42 1BEV 2 2 BOVINE ENTEROVIRUS COAT PROTEINS VP1 TO VP4 12064
43 4JGY 2 B Polyprotein, capsid protein VP2 STRAIN NINGBO.CHN/028-2/2009 138948
44 1AL2 3 2 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
45 1PO1 3 2 POLIOVIRUS TYPE 1 MAHONEY 138950
46 1AR9 3 2 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
47 5C4W 2 B VP2 138948
48 1H8T 2 B ECHOVIRUS 11 COAT PROTEIN VP2 138949
49 1PO2 3 2 POLIOVIRUS TYPE 1 MAHONEY 138950
50 1ASJ 3 2 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
51 1Z7S 2 2 Human COXSACKIEVIRUS A21 Viral Protein 2 138950
52 1OOP 2 B Coat protein VP2 138949
53 4CDX 2 B VP2 138948
54 3VDD 2 B Protein VP2 UNP residues 70-330 147711
55 1NA1 2 B Coat protein VP2 147712
56 4CDU 2 B VP2 138948
57 1VBB 3 2 POLIOVIRUS TYPE 3 138950
58 1AR6 3 2 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
59 1AR8 3 2 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
60 4N53 2 B Capsid protein VP2 138948
61 4CDW 2 B VP2 138948
62 4CEY 2 B VP2 138948
63 1VBC 3 2 POLIOVIRUS TYPE 3 138950
64 3TN9 2 2 Protein VP2 147711
65 3ZFG 2 B VP2 VIRION OF HUMAN ENTEROVIRUS 71 138948
66 1VBE 3 2 POLIOVIRUS TYPE 3 138950
67 4CEW 2 B VP2 138948
68 3VBS 2 B Genome Polyprotein, capsid protein VP2 138948
69 5ABJ 2 B VP2 UNP RESIDUES 70-323 138948
70 1VBD 3 2 POLIOVIRUS TYPE 1 MAHONEY P1/MAHONEY 138950
71 1TME 2 2 THEILER'S MURINE ENCEPHALOMYELITIS VIRUS (SUBUNIT VP2) 1821750
72 3ZFF 2 B VP2 138948
73 1RHI 2 2 HUMAN RHINOVIRUS 3 COAT PROTEIN 147712
74 1VBA 3 2 POLIOVIRUS TYPE 3 138950
75 4JGZ 2 B Polyprotein, capsid protein VP2 STRAIN NINGBO.CHN/028-2/2009 138948
76 1MQT 2 B Polyprotein Capsid Protein SVDV COAT PROTEIN VP2 138949
77 1RVF 2 2 HUMAN RHINOVIRUS 14 COAT PROTEIN 147712
78 4GB3 2 2 coat protein 2 UNP residues 70-332 138949
79 2X5I 2 B VP2 138949
80 1PIV 3 2 POLIOVIRUS TYPE 3 (SUBUNIT VP2) 138950
81 1COV 2 2 COXSACKIEVIRUS COAT PROTEIN 138949
82 1R1A 2 2 HUMAN RHINOVIRUS 1A COAT PROTEIN (SUBUNIT VP2) 147711
83 1EV1 2 2 ECHOVIRUS 1 VP1, VP2, VP3, VP4 138949
84 4N43 2 B Capsid protein VP2 EV71 capsid protein VP2 138948
85 3VBR 2 B Genome Polyprotein, capsid protein VP0 138948
86 1V9U 2 2 Coat protein VP2 147711
87 4AED 2 B VP2 138948
88 3VBU 2 B Genome Polyprotein, capsid protein VP0 138948
89 3DPR 2 B Protein VP2 147711
90 4L3B 2 B Protein VP2 UNP residues 70-330 147711
91 6LQD 2 B Capsid protein VP2 138948 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
92 6LHK 2 B VP2 protein 138948 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
93 6LHL 2 B VP2 protein 138948 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
94 6LHO 2 B VP2 protein 138948 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
95 6LHP 4 B VP2 protein 138948 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
96 6LHQ 2 B VP2 protein 138948 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
97 6LHA 2 B VP2 protein 138948 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
98 6LHB 2 B VP2 138948 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
99 6LHC 2 B VP2 138948 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
100 6UH1 2 B VP2 138948
101 6UH6 2 B VP2 138948
102 6UH7 2 B VP2 138948
103 6SNW 2 B Coxsackievirus VP2 138948 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
104 6SNB 2 B Capsid protein VP2 138948 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
105 6SMG 2 B Capsid protein VP2 138948 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
106 6SK5 2 B Rhinovirus B5 VP2 147712 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
107 6SK6 2 B Rhinovirus B5 VP2 147712 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
108 6SK7 2 B VP2 capsid protein 147711 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
109 6PSF 3 C Capsid protein VP2 UNP residues 68-332 463676 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
110 6PPO 3 C Capsid protein VP2 UNP residues 68-332 463676 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
111 6P9O 2 2 VP2 UNP residues 70-341 138950
112 6P9W 2 2 VP2 UNP residues 70-341 138950
113 6RJF 2 2 VP2 138949
114 6O06 2 B VP2 UNP residues 77-330 138949
115 6MZI 3 C viral protein 2 UNP residues 70-317 138951
116 6I2K 2 B Polyprotein 138948
117 6ILL 2 B Capsid protein VP2 138949
118 6ILM 2 B Capsid protein VP2 138949
119 6ILN 2 B Capsid protein VP2 138949
120 6ILO 2 B Capsid protein VP2 138949
121 6ILP 2 B Capsid protein VP2 138949
122 6ILJ 2 B Capsid protein VP2 138949
123 6ILK 2 B Capsid protein VP2 138949
124 6IIJ 2 B VP2 138948
125 6AKS 2 B VP2 138948
126 6AKT 2 B VP2 138948
127 6AKU 2 B VP2 138948
128 6HHT 2 B1, B2, E1, E2, H1, H2, K1, K2, N1, N2, Q1, Q2, T1, T2, W1, W2, Z2, c2, f2, i2, l2, o2, r2, u2, x2 Echovirus 18 capsid protein 2 138949
129 6AJ7 4 B Capsid protein VP2 138951
130 6AJ9 6 B Capsid protein VP2 138951
131 6AJ2 2 B Capsid protein VP2 138951
132 6AJ3 2 B Capsid protein VP2 138951
133 6AJ0 2 B Virion protein 2 138951
134 6HBG 2 B Echovirus 18 viral protein 2 138949 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
135 6HBH 2 B Echovirus 18 capsid protein 2 138949
136 6HBJ 2 B Viral protein 2 138949 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
137 6HBK 3 B, E, H, K, N, Q, T, W, Z, c, f Echovirus 18 capsid protein 3 138949
138 6HBL 2 B, E, H, K, N, Q, T, W, Z, c, f, i, l, o, r Echovirus 18 capsid protein 2 138949
139 6ADR 3 B vp2 390157
140 6ADS 3 B VP2 390157
141 6ADT 3 B VP2 390157
142 6ADM 3 B VP2 390157
143 6ACY 2 B VP2 138948
144 6ACZ 2 B VP2 138948
145 6AD0 4 B VP2 138948
146 6ACU 2 B VP2 138948
147 6GZV 2 B Capsid protein VP2 138949 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
148 6DIZ 2 B VP2 138948
149 5ZUD 2 B VP2 138948
150 5ZUF 2 B VP2 138948
151 6CX1 3 C Capsid protein VP2 residues 162-429 390157
152 6CV1 3 C viral protein 2 UNP residues 1-248 138951
153 6CV2 3 C viral protein 2 UNP residues 1-248 138951
154 6CV3 3 C viral protein 2 UNP residues 1-248 138951
155 6CV4 3 C viral protein 2 UNP residues 1-248 138951
156 6CV5 3 C viral protein 2 UNP residues 1-248 138951
157 6CVB 3 C viral protein 2 UNP residues 1-248 138951
158 6CSA 3 C viral protein 2 UNP residues 70-317 138951
159 6CSG 3 C viral protein 2 UNP residues 70-317 138951
160 6CSH 3 C viral protein 2 UNP residues 70-317 138951
161 6CRP 3 C viral protein 2 UNP residues 70-317 138951
162 6CRR 3 C viral protein 2 UNP residues 70-317 138951
163 6CRS 3 C viral protein 2 UNP residues 70-317 138951
164 6CRU 3 C viral protein 2 UNP residues 70-317 138951
165 6CS3 3 C viral protein 2 UNP residues 70-317 138951
166 6CS4 3 C viral protein 2 UNP residues 70-317 138951
167 6CS5 3 C viral protein 2 UNP residues 70-317 138951
168 6CS6 3 C viral protein 2 UNP residues 70-317 138951
169 6EIT 2 2 VP2 138950
170 5XS4 2 B Genome polyprotein UNP residues 7-=325 138948
171 5XS7 4 B Genome polyprotein UNP residues 70-325 138948
172 5W3L 3 C viral protein 2 UNP residues 70-331 147712
173 5W3M 5 C viral protein 2 UNP residues 70-331 147712
174 5W3O 5 C viral protein 2 UNP residues 70-331 147712
175 5W3E 5 C viral protein 2 UNP residues 70-331 147712
176 5O5P 2 2 Capsid proteins, VP2 138950
177 5O5B 2 2 Capsid proteins 138950
178 5KWL 2 2 VP2 UNP residues 70-337 138950
179 5KTZ 2 2 VP2 UNP residues 70-338 138950
180 5KU0 2 2 VP2 UNP residues 70-338 138950
181 5KU2 2 2 VP2 UNP residues 70-337 138950
182 5K0U 3 C Capsid protein VP2 UNP residues 68-332 463676
183 3JD7 2 2 Capsid protein VP2 UNP residues 70-332 138949
184 3JBC 2 2 Capsid protein VP2 UNP residues 70-341 138950
185 3JBD 2 2 Capsid protein VP2 UNP residues 70-341 138950
186 3JBE 2 2 Capsid protein VP2 UNP residues 70-341 138950
187 3JBF 2 2 Capsid protein VP2 UNP residues 70-341 138950
188 3JBG 2 2 Capsid protein VP2 UNP residues 70-341 138950
189 5A8F 3 C HUMAN SAFFOLD VIRUS-3 VP2 1821750
190 3J9F 2 2 Protein VP2 UNP residues 70-341 138950
191 3J8F 2 2 Capsid protein VP2 UNP residues 70-341 138950
192 4C0U 2 B VP2 138948
193 4C0Y 2 B VP2 138948
194 4C10 4 B VP3 138948
195 3J48 2 2 Protein VP2 UNP residues 70-341 138950
196 4BIP 2 B VP2 138948
197 4BIQ 2 B VP2 HOMOLOGY MODEL OF COXSACKIEVIRUS A7 EMPTY CAPSID PROTEIN VP2 138948
198 3J3O 5 2 Protein VP2 UNP residues 70-341 138950
199 3J3P 4 2 Protein VP2 UNP residues 70-341 138950
200 3J2J 3 C Protein VP2 UNP residues 79-330 138949
201 3J22 2 B capsid protein VP0 UNP residues 82-318 138948
202 3J23 2 B capsid protein VP0 UNP residues 82-318 138948
203 3IYP 3 C Polyprotein 138949
204 3IYB 4 4 Genome polyprotein 138950 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
205 3IYC 4 4 Genome polyprotein 138950 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
206 3EPC 3 2 Protein VP2 138950
207 3EPD 4 2 protein VP2 138950
208 3EPF 3 2 Protein VP2 138950
209 2C8I 2 B ECHOVIRUS 11 COAT PROTEIN VP2 138949
210 1Z7Z 2 2 human coxsackievirus A21 Viral Protein 2 residues 2010-2272 138950
211 1XYR 2 2 Genome polyprotein, Coat protein VP2 residues 96-332 138950
212 1UPN 2 B ECHOVIRUS 11 COAT PROTEIN VP2 138949
213 1NN8 3 2 coat protein VP2 138950
214 1M11 3 2 COAT PROTEIN VP2 138949
215 1JEW 3 2 COXSACKIEVIRUS CAPSID, COAT PROTEIN VP2 Residues 70-332 138949
216 1DGI 3 2 VP2 138950
217 1D3E 3 2 PROTEIN (RHINOVIRUS 16 COAT PROTEIN VP2) 169066
218 1D3I 3 2 PROTEIN (RHINOVIRUS 14 COAT PROTEIN VP2) 169066
219 1VRH 2 2 RHINOVIRUS 14 147712
220 1RUC 2 2 RHINOVIRUS 14 147712
221 1RUD 2 2 RHINOVIRUS 14 147712
222 1RUE 2 2 RHINOVIRUS 14 147712
223 1RUF 2 2 RHINOVIRUS 14 147712
224 1RUG 2 2 RHINOVIRUS 14 147712
225 1RUH 2 2 RHINOVIRUS 14 147712
226 1RUI 2 2 RHINOVIRUS 14 147712
227 1RUJ 2 2 RHINOVIRUS 14 147712
228 1HRV 2 2 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP2) 147712
229 2HWB 2 2 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP2) 147712
230 2HWC 2 2 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP2) 147712
231 2HWD 2 2 HUMAN RHINOVIRUS 1A COAT PROTEIN (SUBUNIT VP2) 147711
232 2HWE 2 2 HUMAN RHINOVIRUS 1A COAT PROTEIN (SUBUNIT VP2) 147711
233 2HWF 2 2 HUMAN RHINOVIRUS 1A COAT PROTEIN (SUBUNIT VP2) 147711
234 1HRI 2 2 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP2) 147712
235 1TMF 2 2 THEILER'S MURINE ENCEPHALOMYELITIS VIRUS (SUBUNIT VP2) 1821750
236 1MEC 2 2 MENGO VIRUS COAT PROTEIN (SUBUNIT VP2) 1821749
237 1R09 2 2 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP2) 147712
238 1R08 2 2 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP2) 147712
239 1RMU 2 2 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP2) 147712
240 2R04 2 2 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP2) 147712
241 2R06 2 2 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP2) 147712
242 2R07 2 2 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP2) 147712
243 2RM2 2 2 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP2) 147712
244 2RMU 2 2 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP2) 147712
245 2RR1 2 2 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP2) 147712
246 2RS1 2 2 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP2) 169066
247 2RS3 2 2 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP2) 147712
248 2RS5 2 2 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP2) 147712