6ILL

Cryo-EM structure of Echovirus 6 complexed with its uncoating receptor FcRn at PH 5.5


Sequence Similarity Clusters for the Entities in PDB 6ILL

Entity #1 | Chains: A
Capsid protein VP1 protein, length: 273 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 6 15635
95 % 1 6 16211
90 % 1 6 15912
70 % 8 16 5330
50 % 11 29 928
40 % 129 245 187
30 % 131 249 193
Entity #2 | Chains: B
Capsid protein VP2 protein, length: 252 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 14087
95 % 1 7 13152
90 % 1 7 13008
70 % 11 31 877
50 % 123 246 191
40 % 123 246 204
30 % 128 259 209
Entity #3 | Chains: C
Capsid protein VP3 protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 6 17934
95 % 1 7 13655
90 % 1 7 13478
70 % 11 31 875
50 % 8 23 1033
40 % 132 260 184
30 % 153 302 127
Entity #4 | Chains: D
Capsid protein VP4 protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 56372
95 % 3 8 10624
90 % 10 20 4250
70 % 42 96 697
50 % 96 167 403
40 % 96 167 432
30 % 96 167 447

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

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Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1D4M 2 2 PROTEIN (COXSACKIEVIRUS A9) VP2 138949
2 1H8T 2 B ECHOVIRUS 11 COAT PROTEIN VP2 138949
3 1OOP 2 B Coat protein VP2 138949
4 1MQT 2 B Polyprotein Capsid Protein SVDV COAT PROTEIN VP2 138949
5 4GB3 2 2 coat protein 2 UNP residues 70-332 138949
6 2X5I 2 B VP2 138949
7 1COV 2 2 COXSACKIEVIRUS COAT PROTEIN 138949
8 1EV1 2 2 ECHOVIRUS 1 VP1, VP2, VP3, VP4 138949
9 6RJF 2 2 VP2 138949
10 6O06 2 B VP2 UNP residues 77-330 138949
11 6ILL 2 B Capsid protein VP2 138949
12 6ILM 2 B Capsid protein VP2 138949
13 6ILN 2 B Capsid protein VP2 138949
14 6ILO 2 B Capsid protein VP2 138949
15 6ILP 2 B Capsid protein VP2 138949
16 6ILJ 2 B Capsid protein VP2 138949
17 6ILK 2 B Capsid protein VP2 138949
18 6HHT 2 B1, B2, E1, E2, H1, H2, K1, K2, N1, N2, Q1, Q2, T1, T2, W1, W2, Z2, c2, f2, i2, l2, o2, r2, u2, x2 Echovirus 18 capsid protein 2 138949
19 6HBG 2 B Echovirus 18 viral protein 2 138949 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
20 6HBH 2 B Echovirus 18 capsid protein 2 138949
21 6HBJ 2 B Viral protein 2 138949 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
22 6HBK 3 B, E, H, K, N, Q, T, W, Z, c, f Echovirus 18 capsid protein 3 138949
23 6HBL 2 B, E, H, K, N, Q, T, W, Z, c, f, i, l, o, r Echovirus 18 capsid protein 2 138949
24 6GZV 2 B Capsid protein VP2 138949 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
25 3JD7 2 2 Capsid protein VP2 UNP residues 70-332 138949
26 3J2J 3 C Protein VP2 UNP residues 79-330 138949
27 3IYP 3 C Polyprotein 138949
28 2C8I 2 B ECHOVIRUS 11 COAT PROTEIN VP2 138949
29 1UPN 2 B ECHOVIRUS 11 COAT PROTEIN VP2 138949
30 1M11 3 2 COAT PROTEIN VP2 138949
31 1JEW 3 2 COXSACKIEVIRUS CAPSID, COAT PROTEIN VP2 Residues 70-332 138949