Sequence Similarity Clusters for the Entities in PDB 6ILL

Entity #1 | Chains: A
Capsid protein VP1 protein, length: 273 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 6 16801
95 % 1 6 14986
90 % 1 6 14830
70 % 8 16 5065
50 % 11 29 868
40 % 106 222 197
30 % 106 222 205
Entity #2 | Chains: B
Capsid protein VP2 protein, length: 252 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 13367
95 % 1 7 12917
90 % 1 7 12738
70 % 11 31 825
50 % 99 222 197
40 % 99 222 209
30 % 104 235 214
Entity #3 | Chains: C
Capsid protein VP3 protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 6 14838
95 % 1 7 13022
90 % 1 7 12769
70 % 11 31 824
50 % 8 23 953
40 % 108 236 189
30 % 129 278 128
Entity #4 | Chains: D
Capsid protein VP4 protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 54108
95 % 3 8 10164
90 % 10 20 4016
70 % 42 96 650
50 % 83 154 419
40 % 83 154 434
30 % 83 154 457

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1D4M 2 2 PROTEIN (COXSACKIEVIRUS A9) VP2 138949
2 1H8T 2 B ECHOVIRUS 11 COAT PROTEIN VP2 138949
3 1OOP 2 B Coat protein VP2 138949
4 1MQT 2 B Polyprotein Capsid Protein SVDV COAT PROTEIN VP2 138949
5 4GB3 2 2 coat protein 2 UNP residues 70-332 138949
6 2X5I 2 B VP2 138949
7 1COV 2 2 COXSACKIEVIRUS COAT PROTEIN 138949
8 1EV1 2 2 ECHOVIRUS 1 VP1, VP2, VP3, VP4 138949
9 6RJF 2 2 VP2 138949
10 6O06 2 B VP2 UNP residues 77-330 138949
11 6ILL 2 B Capsid protein VP2 138949
12 6ILM 2 B Capsid protein VP2 138949
13 6ILN 2 B Capsid protein VP2 138949
14 6ILO 2 B Capsid protein VP2 138949
15 6ILP 2 B Capsid protein VP2 138949
16 6ILJ 2 B Capsid protein VP2 138949
17 6ILK 2 B Capsid protein VP2 138949
18 6HHT 2 B1, B2, E1, E2, H1, H2, K1, K2, N1, N2, Q1, Q2, T1, T2, W1, W2, Z2, c2, f2, i2, l2, o2, r2, u2, x2 Echovirus 18 capsid protein 2 138949
19 6HBG 2 B Echovirus 18 viral protein 2 138949 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
20 6HBH 2 B Echovirus 18 capsid protein 2 138949
21 6HBJ 2 B Viral protein 2 138949 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
22 6HBK 3 B, E, H, K, N, Q, T, W, Z, c, f Echovirus 18 capsid protein 3 138949
23 6HBL 2 B, E, H, K, N, Q, T, W, Z, c, f, i, l, o, r Echovirus 18 capsid protein 2 138949
24 6GZV 2 B Capsid protein VP2 138949 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
25 3JD7 2 2 Capsid protein VP2 UNP residues 70-332 138949
26 3J2J 3 C Protein VP2 UNP residues 79-330 138949
27 3IYP 3 C Polyprotein 138949
28 2C8I 2 B ECHOVIRUS 11 COAT PROTEIN VP2 138949
29 1UPN 2 B ECHOVIRUS 11 COAT PROTEIN VP2 138949
30 1M11 3 2 COAT PROTEIN VP2 138949
31 1JEW 3 2 COXSACKIEVIRUS CAPSID, COAT PROTEIN VP2 Residues 70-332 138949