6ILL

Cryo-EM structure of Echovirus 6 complexed with its uncoating receptor FcRn at PH 5.5


Sequence Similarity Clusters for the Entities in PDB 6ILL

Entity #1 | Chains: A
Capsid protein VP1 protein, length: 273 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 6 17510
95 % 1 6 15716
90 % 1 6 14145
70 % 8 16 5260
50 % 11 29 924
40 % 118 234 197
30 % 120 238 207
Entity #2 | Chains: B
Capsid protein VP2 protein, length: 252 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 13955
95 % 1 7 13479
90 % 1 7 13270
70 % 11 31 868
50 % 112 235 199
40 % 112 235 213
30 % 117 248 215
Entity #3 | Chains: C
Capsid protein VP3 protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 6 16286
95 % 1 7 13442
90 % 1 7 13226
70 % 11 31 865
50 % 119 245 177
40 % 121 249 186
30 % 142 291 131
Entity #4 | Chains: D
Capsid protein VP4 protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 50828
95 % 3 8 10551
90 % 10 20 4194
70 % 31 81 847
50 % 90 161 418
40 % 90 161 446
30 % 90 161 464

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 6ILL 2 B Capsid protein VP2 138949
2 6ILM 2 B Capsid protein VP2 138949
3 6ILN 2 B Capsid protein VP2 138949
4 6ILO 2 B Capsid protein VP2 138949
5 6ILP 2 B Capsid protein VP2 138949
6 6ILJ 2 B Capsid protein VP2 138949
7 6ILK 2 B Capsid protein VP2 138949