6ILL

Cryo-EM structure of Echovirus 6 complexed with its uncoating receptor FcRn at PH 5.5


Sequence Similarity Clusters for the Entities in PDB 6ILL

Entity #1 | Chains: A
Capsid protein VP1 protein, length: 273 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 6 16059
95 % 1 6 16678
90 % 1 6 16074
70 % 12 17 5288
50 % 22 40 837
40 % 144 260 191
30 % 146 264 196
Entity #2 | Chains: B
Capsid protein VP2 protein, length: 252 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 14477
95 % 1 7 13640
90 % 1 7 13993
70 % 20 40 813
50 % 136 259 202
40 % 136 259 209
30 % 141 272 211
Entity #3 | Chains: C
Capsid protein VP3 protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 6 16330
95 % 1 7 14203
90 % 1 7 13992
70 % 22 42 787
50 % 136 253 242
40 % 147 275 182
30 % 147 275 189
Entity #4 | Chains: D
Capsid protein VP4 protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 57286
95 % 3 8 10982
90 % 18 28 2929
70 % 51 104 666
50 % 106 177 400
40 % 106 177 422
30 % 106 177 438

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 6ILL 3 C Capsid protein VP3 138949
2 6ILM 3 C Capsid protein VP3 138949
3 6ILN 3 C Capsid protein VP3 138949
4 6ILP 3 C Capsid protein VP3 138949
5 6ILJ 3 C Capsid protein VP3 138949
6 6ILK 3 C Capsid protein VP3 138949