6ILL

Cryo-EM structure of Echovirus 6 complexed with its uncoating receptor FcRn at PH 5.5


Sequence Similarity Clusters for the Entities in PDB 6ILL

Entity #1 | Chains: A
Capsid protein VP1 protein, length: 273 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 6 15635
95 % 1 6 16211
90 % 1 6 15912
70 % 8 16 5330
50 % 11 29 928
40 % 129 245 187
30 % 131 249 193
Entity #2 | Chains: B
Capsid protein VP2 protein, length: 252 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 14087
95 % 1 7 13152
90 % 1 7 13008
70 % 11 31 877
50 % 123 246 191
40 % 123 246 204
30 % 128 259 209
Entity #3 | Chains: C
Capsid protein VP3 protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 6 17934
95 % 1 7 13655
90 % 1 7 13478
70 % 11 31 875
50 % 8 23 1033
40 % 132 260 184
30 % 153 302 127
Entity #4 | Chains: D
Capsid protein VP4 protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 56372
95 % 3 8 10624
90 % 10 20 4250
70 % 42 96 697
50 % 96 167 403
40 % 96 167 432
30 % 96 167 447

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

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ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1OOP 3 C Coat protein VP3 138949
2 1MQT 3 C Polyprotein Capsid Protein SVDV COAT PROTEIN VP3 138949
3 4GB3 3 3 coat protein 3 UNP residues 333-570 138949
4 1COV 3 3 COXSACKIEVIRUS COAT PROTEIN 138949
5 1EV1 3 3 ECHOVIRUS 1 VP1, VP2, VP3, VP4 138949
6 6RJF 3 3 VP3 138949
7 6O06 3 C VP3 UNP residues 331-569 138949
8 6ILL 3 C Capsid protein VP3 138949
9 6ILM 3 C Capsid protein VP3 138949
10 6ILN 3 C Capsid protein VP3 138949
11 6ILO 3 C Capsid protein VP3 138949
12 6ILP 3 C Capsid protein VP3 138949
13 6ILJ 3 C Capsid protein VP3 138949
14 6ILK 3 C Capsid protein VP3 138949
15 6HHT 3 C1, C2, F1, F2, I1, I2, L1, L2, O1, O2, R1, R2, U1, U2, X1, X2, a2, d2, g2, j2, m2, p2, s2, v2, y2 Echovirus 18 capsid protein 3 138949
16 6HBG 3 C Echovirus 18 viral protein 3 138949 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
17 6HBH 3 C Echovirus 18 capsid protein 3 138949
18 6HBJ 3 C Viral protein 3 138949 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
19 6HBK 2 C, F, I, L, O, R, U, X, a, d, g Echovirus 18 capsid protein 2 138949
20 6HBL 3 C, F, I, L, O, R, U, X, a, d, g, j, m, p, s Echovirus 18 capsid protein 3 138949
21 6GZV 3 C Capsid protein VP3 138949 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
22 3JD7 3 3 Capsid protein VP3 UNP residues 333-570 138949
23 1JEW 4 3 COXSACKIEVIRUS CAPSID, COAT PROTEIN VP3 Residues 333-570 138949