Sequence Similarity Clusters for the Entities in PDB 6ILL

Entity #1 | Chains: A
Capsid protein VP1 protein, length: 273 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 6 16807
95 % 1 6 16094
90 % 1 6 14870
70 % 8 16 5254
50 % 11 29 872
40 % 61 132 376
30 % 106 224 204
Entity #2 | Chains: B
Capsid protein VP2 protein, length: 252 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 13407
95 % 1 7 13130
90 % 1 7 12876
70 % 11 31 820
50 % 99 222 196
40 % 99 222 208
30 % 104 235 212
Entity #3 | Chains: C
Capsid protein VP3 protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 6 15610
95 % 1 7 12932
90 % 1 7 12742
70 % 11 31 816
50 % 108 234 177
40 % 108 236 189
30 % 129 278 128
Entity #4 | Chains: D
Capsid protein VP4 protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 54229
95 % 3 8 10158
90 % 10 20 4045
70 % 31 81 786
50 % 83 154 415
40 % 83 154 436
30 % 83 154 456

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 6ILL 3 C Capsid protein VP3 138949
2 6ILM 3 C Capsid protein VP3 138949
3 6ILN 3 C Capsid protein VP3 138949
4 6ILO 3 C Capsid protein VP3 138949
5 6ILP 3 C Capsid protein VP3 138949
6 6ILJ 3 C Capsid protein VP3 138949
7 6ILK 3 C Capsid protein VP3 138949