6ILL

Cryo-EM structure of Echovirus 6 complexed with its uncoating receptor FcRn at PH 5.5


Sequence Similarity Clusters for the Entities in PDB 6ILL

Entity #1 | Chains: A
Capsid protein VP1 protein, length: 273 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 6 15320
95 % 1 6 15889
90 % 1 6 15657
70 % 8 16 5378
50 % 11 29 911
40 % 90 172 250
30 % 118 236 206
Entity #2 | Chains: B
Capsid protein VP2 protein, length: 252 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 13854
95 % 1 7 13321
90 % 1 7 13140
70 % 11 31 857
50 % 110 233 193
40 % 110 233 208
30 % 115 246 214
Entity #3 | Chains: C
Capsid protein VP3 protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 6 15592
95 % 1 7 13579
90 % 1 7 13395
70 % 11 31 854
50 % 117 243 175
40 % 119 247 185
30 % 140 289 128
Entity #4 | Chains: D
Capsid protein VP4 protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 55704
95 % 3 8 10456
90 % 10 20 4162
70 % 42 96 680
50 % 90 161 414
40 % 90 161 439
30 % 90 161 458

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 6ILL 4 D Capsid protein VP4 138949
2 6ILP 4 D Capsid protein VP4 138949