6ILL

Cryo-EM structure of Echovirus 6 complexed with its uncoating receptor FcRn at PH 5.5


Sequence Similarity Clusters for the Entities in PDB 6ILL

Entity #1 | Chains: A
Capsid protein VP1 protein, length: 273 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 6 16059
95 % 1 6 16678
90 % 1 6 16074
70 % 12 17 5288
50 % 22 40 837
40 % 144 260 191
30 % 146 264 196
Entity #2 | Chains: B
Capsid protein VP2 protein, length: 252 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 14477
95 % 1 7 13640
90 % 1 7 13993
70 % 20 40 813
50 % 136 259 202
40 % 136 259 209
30 % 141 272 211
Entity #3 | Chains: C
Capsid protein VP3 protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 6 16330
95 % 1 7 14203
90 % 1 7 13992
70 % 22 42 787
50 % 136 253 242
40 % 147 275 182
30 % 147 275 189
Entity #4 | Chains: D
Capsid protein VP4 protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 57286
95 % 3 8 10982
90 % 18 28 2929
70 % 51 104 666
50 % 106 177 400
40 % 106 177 422
30 % 106 177 438

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

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Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4Q4W 4 4 Coxsackievirus capsid protein VP4 138950
2 4Q4X 4 4 Coxsackievirus capsid protein VP4 138950
3 6T40 4 D VP4 1330520
4 4Q4Y 4 4 Coxsackievirus capsid protein VP4 138950
5 6T4C 4 D VP4 1330520 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
6 6T48 4 D VP4 1330520 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
7 1AYM 4 4 HUMAN RHINOVIRUS 16 COAT PROTEIN 169066
8 4WM8 4 D VP4 138951
9 5BNP 4 D Capsid protein VP4 UNP residues 2-69 138951
10 1PVC 5 4 POLIOVIRUS TYPE 3, SABIN STRAIN P3/SABIN P3/LEON/12A(1)B 138950
11 5BNO 4 D Capsid protein VP4 UNP residues 2-69 138951
12 1FPN 4 4 COAT PROTEIN VP4 147711
13 5OSN 4 D Capsid protein 12064
14 1ND2 4 D coat protein VP4 147711
15 4WM7 4 D VP4 138951
16 1HXS 4 4 GENOME POLYPROTEIN, COAT PROTEIN VP4 RESIDUES 1-68 138950
17 5BNN 4 D Capsid protein VP4 UNP residues 2-69 138951
18 1NCQ 4 D COAT PROTEIN VP4 147712
19 1D4M 4 4 PROTEIN (COXSACKIEVIRUS A9) VP4 138949
20 4RHV 4 4 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4) 147712
21 1EAH 4 4 POLIOVIRUS TYPE 2 COAT PROTEINS VP1 TO VP4 138950
22 4Q4V 4 4 Coxsackievirus capsid protein VP4 138950
23 1K5M 4 D COAT PROTEIN VP4 (P1A) 147712
24 1QJU 4 4 PROTEIN VP4 RESIDUE 1 OF CHAIN 4 MYRISTOYLATED (RESIDUE 4000 IS MYRISTATE) ANTIVIRAL COMPOUND VP61209 (FORMERLY WIN 61209) LOCATED IN A POCKET IN VIRAL PROTEIN WITH A POSSIBLE ZINC, LOCATED ON FIVE FOLD AXES RESIDUES 2-69 147711
25 2PLV 4 4 HUMAN POLIOVIRUS TYPE 1 (SUBUNIT VP4) 138950
26 4PDW 4 D Capsid protein VP4/VP2 residue 2-69 147712
27 4CDQ 4 D VP4 138948
28 3ZFE 4 D VP4 VIRION OF HUMAN ENTEROVIRUS 71 138948
29 1QJX 4 4 PROTEIN VP4 RESIDUE 1 OF CHAIN 4 MYRISTOYLATED (RESIDUE 4000 IS MYRISTATE) ANTIVIRAL COMPOUND VP61209 (FORMERLY WIN 61209) LOCATED IN A POCKET IN VIRAL PROTEIN WITH A POSSIBLE ZINC, LOCATED ON FIVE FOLD AXES RESIDUES 2-69 147711
30 1QJY 4 4 PROTEIN VP4 RESIDUE 1 OF CHAIN 4 MYRISTOYLATED (RESIDUE 4000 IS MYRISTATE) ANTIVIRAL COMPOUND VP61209 (FORMERLY WIN 61209) LOCATED IN A POCKET IN VIRAL PROTEIN WITH A POSSIBLE ZINC, LOCATED ON FIVE FOLD AXES RESIDUES 2-69 147711
31 1NCR 4 D coat protein VP4 147711
32 1AYN 4 4 HUMAN RHINOVIRUS 16 COAT PROTEIN 169066
33 1AR7 5 4 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
34 1ND3 4 D coat protein VP4 147711
35 1BEV 4 4 BOVINE ENTEROVIRUS COAT PROTEINS VP1 TO VP4 12064
36 1AL2 5 4 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
37 1PO1 5 4 POLIOVIRUS TYPE 1 MAHONEY 138950
38 1AR9 5 4 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
39 5C4W 4 D VP4 138948
40 1H8T 4 D ECHOVIRUS 11 COAT PROTEIN VP4 138949
41 1PO2 5 4 POLIOVIRUS TYPE 1 MAHONEY 138950
42 1ASJ 5 4 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
43 1Z7S 4 4 Human coxsackievirus A21 Viral Protein 4 138950
44 1OOP 4 D Coat protein VP4 138949
45 4CDX 4 D VP4 138948
46 3VDD 4 D Protein VP4 UNP residues 1-69 147711
47 1NA1 4 D Coat protein VP4 147712
48 4CDU 4 D VP4 138948
49 1VBB 5 4 POLIOVIRUS TYPE 3 138950
50 1AR6 5 4 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
51 1AR8 5 4 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
52 4N53 4 D Capsid protein VP4 138948
53 4CDW 4 D VP4 138948
54 4CEY 4 D VP4 138948
55 1VBC 5 4 POLIOVIRUS TYPE 3 138950
56 3ZFG 4 D VP4 VIRION OF HUMAN ENTEROVIRUS 71 138948
57 1VBE 5 4 POLIOVIRUS TYPE 3 138950
58 4CEW 4 D VP4 138948
59 5ABJ 4 D VP4 UNP RESIDUES 1-69 138948
60 1VBD 5 4 POLIOVIRUS TYPE 1 MAHONEY P1/MAHONEY 138950
61 3ZFF 4 D VP4 138948
62 1RHI 4 4 HUMAN RHINOVIRUS 3 COAT PROTEIN 147712
63 1VBA 5 4 POLIOVIRUS TYPE 3 138950
64 1MQT 4 D Polyprotein Capsid Protein SVDV COAT PROTEIN VP4 138949
65 1RVF 4 4 HUMAN RHINOVIRUS 14 COAT PROTEIN 169066
66 4GB3 4 4 coat protein 4 UNP residues 2-69 138949
67 2X5I 4 D VP4 138949
68 1PIV 5 4 POLIOVIRUS TYPE 3 (SUBUNIT VP4) 138950
69 1COV 4 4 COXSACKIEVIRUS COAT PROTEIN 138949
70 1EV1 4 4 ECHOVIRUS 1 VP1, VP2, VP3, VP4 138949
71 1V9U 4 4 Coat protein VP4 147711
72 4AED 4 D VP4 138948
73 3DPR 4 D Protein VP4 147711
74 7C9X 4 D VP4 138949
75 7C9Y 4 D VP4 138949
76 7C9Z 4 D VP4 138949
77 7C9S 4 D VP4 138949
78 7C9V 4 D VP4 138949
79 7C9W 4 D VP4 138949
80 7C80 6 D VP4 138949
81 7C81 4 D VP4 138949
82 7BZN 4 D Capsid protein VP4 138948
83 7BZO 4 D Capsid protein VP4 138948
84 7BZT 4 D Capsid protein VP4 138948
85 7BZU 4 D Capsid protein VP4 138948
86 6WDS 5 D viral protein 4 UNP residues 2-69 138951
87 6WDT 4 D viral protein 4 UNP residues 2-69 138951
88 6LQD 4 D Capsid protein VP4 138948 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
89 6LHK 4 D VP4 protein 138948
90 6LHP 6 D VP4 protein 138948
91 6LHQ 4 D VP4 protein 138948
92 6LHA 4 D VP4 protein 138948
93 6UH1 4 D VP4 138948 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
94 6UH6 4 D VP4 138948 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
95 6UH7 4 D VP4 138948 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
96 6SNW 4 D Coxsackievirus VP4 138948 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
97 6SMG 4 D Capsid protein VP4 138948 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
98 6SK5 1 D Rhinovirus B5 VP4 147712
99 6SK6 1 D Rhinovirus B5 VP4 147712
100 6SK7 4 D VP4 capsid protein 147711
101 6Q0B 4 4 Capsid protein VP4 UNP residues 2-70 138950
102 6PSF 4 D Capsid protein VP4 UNP residues 2-67 463676 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
103 6PPO 4 D Capsid protein VP4 UNP residues 2-67 463676 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
104 6RJF 4 4 VP4 138949
105 6MZI 4 D viral protein 4 UNP residues 2-69 138951
106 6ILL 4 D Capsid protein VP4 138949
107 6ILM 4 D Capsid protein VP4 138949
108 6ILN 4 D Capsid protein VP4 138949
109 6ILP 4 D Capsid protein VP4 138949
110 6ILJ 4 D Capsid protein VP4 138949
111 6ILK 4 D Capsid protein VP4 138949
112 6IIJ 4 D VP4 138948
113 6AKS 4 D VP4 138948
114 6AJ0 4 D Capsid protein VP4 138951
115 6HBG 4 D Echovirus 18 viral protein 4 138949
116 6AD0 6 D VP4 138948
117 6ACU 4 D VP4 138948
118 6GZV 4 D Capsid protein VP4 138949 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
119 6CV1 4 D viral protein 4 UNP residues 2-69 138951
120 6CV2 4 D viral protein 4 UNP residues 2-69 138951
121 6CV5 4 D viral protein 4 UNP residues 2-69 138951
122 6CVB 4 D viral protein 4 UNP residues 2-69 138951
123 6CSG 4 D viral protein 4 UNP residues 2-69 138951
124 6CRP 4 D viral protein 4 UNP residues 2-69 138951
125 6CRR 4 D viral protein 4 UNP residues 2-69 138951
126 6CS3 4 D viral protein 4 UNP residues 2-69 138951
127 5W3L 4 D viral protein 4 UNP residues 2-69 147712
128 5W3M 6 D viral protein 4 UNP residues 2-69 147712
129 5W3E 6 D viral protein 4 UNP residues 2-69 147712
130 5O5P 4 4 Genome polyprotein 138950 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
131 5O5B 4 4 VP4 138950 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
132 5K0U 4 D Capsid protein VP4 UNP residues 2-67 463676
133 3JD7 4 4 Capsid protein VP4 UNP residues 2-69 138949
134 3JBC 4 4 Capsid protein VP4 UNP residues 2-69 138950
135 3JBD 4 4 Capsid protein VP4 UNP residues 2-69 138950
136 3JBE 4 4 Capsid protein VP4 UNP residues 2-69 138950
137 3JBF 4 4 Capsid protein VP4 UNP residues 2-69 138950
138 3JBG 4 4 Capsid protein VP4 UNP residues 2-69 138950
139 3J9F 4 4 Protein VP4 UNP residues 2-69 138950
140 3J8F 4 4 Capsid protein VP4 UNP residues 2-69 138950
141 4C10 6 D VP4 138948
142 3J3O 7 4 Protein VP4 UNP residues 2-69 138950
143 3IYP 4 D Polyprotein 138949
144 3EPC 4 4 Protein VP4 138950
145 3EPD 5 4 protein VP4 138950
146 3EPF 4 4 Protein VP4 138950
147 1UPN 4 D ECHOVIRUS 11 COAT PROTEIN VP4 STRUCTURE OF ECHOVIRUS TYPE 11 FITTED INTO CRYO-EM ELECTRON DENSITY FOR ECHOVIRUS TYPE 12. THE EM DENSITY HAS BEEN DEPOSITED IN THE EMDB, WITH ACCESSION CODE 1057 138949
148 1NN8 5 4 coat protein VP4 138950
149 1JEW 5 4 COXSACKIEVIRUS CAPSID, COAT PROTEIN VP4 Residues 2-69 138949
150 1DGI 5 4 VP4 POLIOVIRUS FRAGMENTS VP1,VP2,VP3,VP4 138950
151 1D3E 5 4 PROTEIN (RHINOVIRUS 16 COAT PROTEIN VP4) 169066
152 1D3I 5 4 PROTEIN (RHINOVIRUS 14 COAT PROTEIN VP4) 169066
153 1VRH 4 4 RHINOVIRUS 14 147712
154 1RUC 4 4 RHINOVIRUS 14 147712
155 1RUD 4 4 RHINOVIRUS 14 147712
156 1RUE 4 4 RHINOVIRUS 14 147712
157 1RUF 4 4 RHINOVIRUS 14 147712
158 1RUG 4 4 RHINOVIRUS 14 147712
159 1RUH 4 4 RHINOVIRUS 14 147712
160 1RUI 4 4 RHINOVIRUS 14 147712
161 1RUJ 4 4 RHINOVIRUS 14 147712
162 1HRV 4 4 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4) 147712
163 2HWB 4 4 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4) 147712
164 2HWC 4 4 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4) 147712
165 1HRI 4 4 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4) 147712
166 1R09 4 4 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4) 147712
167 1R08 4 4 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4) 147712
168 1RMU 4 4 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4) 147712
169 2R04 4 4 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4) 147712
170 2R06 4 4 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4) 147712
171 2R07 4 4 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4) 147712
172 2RM2 4 4 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4) 147712
173 2RMU 4 4 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4) 147712
174 2RR1 4 4 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4) 147712
175 2RS1 4 4 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4) 169066
176 2RS3 4 4 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4) 147712
177 2RS5 4 4 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4) 147712