Sequence Similarity Clusters for the Entities in PDB 6ILL

Entity #1 | Chains: A
Capsid protein VP1 protein, length: 273 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 6 15428
95 % 1 6 14847
90 % 1 6 14619
70 % 8 16 4967
50 % 11 29 846
40 % 72 168 237
30 % 72 170 243
Entity #2 | Chains: B
Capsid protein VP2 protein, length: 252 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 12930
95 % 1 7 12671
90 % 1 7 12480
70 % 11 31 791
50 % 91 213 198
40 % 91 213 216
30 % 96 226 214
Entity #3 | Chains: C
Capsid protein VP3 protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 6 16255
95 % 1 7 12879
90 % 1 7 12717
70 % 11 31 801
50 % 100 225 177
40 % 100 227 193
30 % 121 268 127
Entity #4 | Chains: D
Capsid protein VP4 protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 40111
95 % 3 8 9926
90 % 10 20 3961
70 % 42 96 633
50 % 76 148 421
40 % 76 148 444
30 % 76 148 463

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures

ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4Q4W 4 4 Coxsackievirus capsid protein VP4 138950
2 4Q4X 4 4 Coxsackievirus capsid protein VP4 138950
3 4Q4Y 4 4 Coxsackievirus capsid protein VP4 138950
4 1AYM 4 4 HUMAN RHINOVIRUS 16 COAT PROTEIN 169066
5 4WM8 4 D VP4 138951
6 5BNP 4 D Capsid protein VP4 UNP residues 2-69 138951
7 1PVC 5 4 POLIOVIRUS TYPE 3, SABIN STRAIN P3/SABIN P3/LEON/12A(1)B 138950
8 5BNO 4 D Capsid protein VP4 UNP residues 2-69 138951
9 1FPN 4 4 COAT PROTEIN VP4 147711
10 5OSN 4 D Capsid protein 12064
11 1ND2 4 D coat protein VP4 147711
12 4WM7 4 D VP4 138951
13 1HXS 4 4 GENOME POLYPROTEIN, COAT PROTEIN VP4 RESIDUES 1-68 138950
14 5BNN 4 D Capsid protein VP4 UNP residues 2-69 138951
15 1NCQ 4 D COAT PROTEIN VP4 147712
16 1D4M 4 4 PROTEIN (COXSACKIEVIRUS A9) VP4 138949
17 4RHV 4 4 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4) 147712
18 1EAH 4 4 POLIOVIRUS TYPE 2 COAT PROTEINS VP1 TO VP4 138950
19 4Q4V 4 4 Coxsackievirus capsid protein VP4 138950
20 1K5M 4 D COAT PROTEIN VP4 (P1A) 147712
21 1QJU 4 4 PROTEIN VP4 RESIDUE 1 OF CHAIN 4 MYRISTOYLATED (RESIDUE 4000 IS MYRISTATE) ANTIVIRAL COMPOUND VP61209 (FORMERLY WIN 61209) LOCATED IN A POCKET IN VIRAL PROTEIN WITH A POSSIBLE ZINC, LOCATED ON FIVE FOLD AXES RESIDUES 2-69 147711
22 2PLV 4 4 HUMAN POLIOVIRUS TYPE 1 (SUBUNIT VP4) 138950
23 4PDW 4 D Capsid protein VP4/VP2 residue 2-69 147712
24 4CDQ 4 D VP4 138948
25 3ZFE 4 D VP4 VIRION OF HUMAN ENTEROVIRUS 71 138948
26 1QJX 4 4 PROTEIN VP4 RESIDUE 1 OF CHAIN 4 MYRISTOYLATED (RESIDUE 4000 IS MYRISTATE) ANTIVIRAL COMPOUND VP61209 (FORMERLY WIN 61209) LOCATED IN A POCKET IN VIRAL PROTEIN WITH A POSSIBLE ZINC, LOCATED ON FIVE FOLD AXES RESIDUES 2-69 147711
27 1QJY 4 4 PROTEIN VP4 RESIDUE 1 OF CHAIN 4 MYRISTOYLATED (RESIDUE 4000 IS MYRISTATE) ANTIVIRAL COMPOUND VP61209 (FORMERLY WIN 61209) LOCATED IN A POCKET IN VIRAL PROTEIN WITH A POSSIBLE ZINC, LOCATED ON FIVE FOLD AXES RESIDUES 2-69 147711
28 1NCR 4 D coat protein VP4 147711
29 1AYN 4 4 HUMAN RHINOVIRUS 16 COAT PROTEIN 169066
30 1AR7 5 4 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
31 1ND3 4 D coat protein VP4 147711
32 1BEV 4 4 BOVINE ENTEROVIRUS COAT PROTEINS VP1 TO VP4 12064
33 1AL2 5 4 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
34 1PO1 5 4 POLIOVIRUS TYPE 1 MAHONEY 138950
35 1AR9 5 4 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
36 5C4W 4 D VP4 138948
37 1H8T 4 D ECHOVIRUS 11 COAT PROTEIN VP4 138949
38 1PO2 5 4 POLIOVIRUS TYPE 1 MAHONEY 138950
39 1ASJ 5 4 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
40 1Z7S 4 4 Human coxsackievirus A21 Viral Protein 4 138950
41 1OOP 4 D Coat protein VP4 138949
42 4CDX 4 D VP4 138948
43 3VDD 4 D Protein VP4 UNP residues 1-69 147711
44 1NA1 4 D Coat protein VP4 147712
45 4CDU 4 D VP4 138948
46 1VBB 5 4 POLIOVIRUS TYPE 3 138950
47 1AR6 5 4 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
48 1AR8 5 4 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
49 4N53 4 D Capsid protein VP4 138948
50 4CDW 4 D VP4 138948
51 4CEY 4 D VP4 138948
52 1VBC 5 4 POLIOVIRUS TYPE 3 138950
53 3ZFG 4 D VP4 VIRION OF HUMAN ENTEROVIRUS 71 138948
54 1VBE 5 4 POLIOVIRUS TYPE 3 138950
55 4CEW 4 D VP4 138948
56 5ABJ 4 D VP4 UNP RESIDUES 1-69 138948
57 1VBD 5 4 POLIOVIRUS TYPE 1 MAHONEY P1/MAHONEY 138950
58 3ZFF 4 D VP4 138948
59 1RHI 4 4 HUMAN RHINOVIRUS 3 COAT PROTEIN 147712
60 1VBA 5 4 POLIOVIRUS TYPE 3 138950
61 1MQT 4 D Polyprotein Capsid Protein SVDV COAT PROTEIN VP4 138949
62 1RVF 4 4 HUMAN RHINOVIRUS 14 COAT PROTEIN 169066
63 4GB3 4 4 coat protein 4 UNP residues 2-69 138949
64 2X5I 4 D VP4 138949
65 1PIV 5 4 POLIOVIRUS TYPE 3 (SUBUNIT VP4) 138950
66 1COV 4 4 COXSACKIEVIRUS COAT PROTEIN 138949
67 1EV1 4 4 ECHOVIRUS 1 VP1, VP2, VP3, VP4 138949
68 1V9U 4 4 Coat protein VP4 147711
69 4AED 4 D VP4 138948
70 3DPR 4 D Protein VP4 147711
71 6SK5 1 D Rhinovirus B5 VP4 147712
72 6SK6 1 D Rhinovirus B5 VP4 147712
73 6SK7 4 D VP4 capsid protein 147711
74 6RJF 4 4 VP4 138949
75 6MZI 4 D viral protein 4 UNP residues 2-69 138951
76 6ILL 4 D Capsid protein VP4 138949
77 6ILM 4 D Capsid protein VP4 138949
78 6ILN 4 D Capsid protein VP4 138949
79 6ILP 4 D Capsid protein VP4 138949
80 6ILJ 4 D Capsid protein VP4 138949
81 6ILK 4 D Capsid protein VP4 138949
82 6IIJ 4 D VP4 138948
83 6AKS 4 D VP4 138948
84 6AJ0 4 D Capsid protein VP4 138951
85 6HBG 4 D Echovirus 18 viral protein 4 138949
86 6AD0 6 D VP4 138948
87 6ACU 4 D VP4 138948
88 6GZV 4 D Capsid protein VP4 138949 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
89 6DIJ 4 D VP4 138948
90 6CV1 4 D viral protein 4 UNP residues 2-69 138951
91 6CV2 4 D viral protein 4 UNP residues 2-69 138951
92 6CV5 4 D viral protein 4 UNP residues 2-69 138951
93 6CVB 4 D viral protein 4 UNP residues 2-69 138951
94 6CSG 4 D viral protein 4 UNP residues 2-69 138951
95 6CRP 4 D viral protein 4 UNP residues 2-69 138951
96 6CRR 4 D viral protein 4 UNP residues 2-69 138951
97 6CS3 4 D viral protein 4 UNP residues 2-69 138951
98 5W3L 4 D viral protein 4 UNP residues 2-69 147712
99 5W3M 6 D viral protein 4 UNP residues 2-69 147712
100 5W3E 6 D viral protein 4 UNP residues 2-69 147712
101 5O5P 4 4 Genome polyprotein 138950 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
102 5O5B 4 4 VP4 138950 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
103 5K0U 4 D Capsid protein VP4 UNP residues 2-67 463676
104 3JD7 4 4 Capsid protein VP4 UNP residues 2-69 138949
105 3JBC 4 4 Capsid protein VP4 UNP residues 2-69 138950
106 3JBD 4 4 Capsid protein VP4 UNP residues 2-69 138950
107 3JBE 4 4 Capsid protein VP4 UNP residues 2-69 138950
108 3JBF 4 4 Capsid protein VP4 UNP residues 2-69 138950
109 3JBG 4 4 Capsid protein VP4 UNP residues 2-69 138950
110 3J9F 4 4 Protein VP4 UNP residues 2-69 138950
111 3J8F 4 4 Capsid protein VP4 UNP residues 2-69 138950
112 4C10 6 D VP4 138948
113 3J3O 7 4 Protein VP4 UNP residues 2-69 138950
114 3IYP 4 D Polyprotein 138949
115 3EPC 4 4 Protein VP4 138950
116 3EPD 5 4 protein VP4 138950
117 3EPF 4 4 Protein VP4 138950
118 1UPN 4 D ECHOVIRUS 11 COAT PROTEIN VP4 STRUCTURE OF ECHOVIRUS TYPE 11 FITTED INTO CRYO-EM ELECTRON DENSITY FOR ECHOVIRUS TYPE 12. THE EM DENSITY HAS BEEN DEPOSITED IN THE EMDB, WITH ACCESSION CODE 1057 138949
119 1NN8 5 4 coat protein VP4 138950
120 1JEW 5 4 COXSACKIEVIRUS CAPSID, COAT PROTEIN VP4 Residues 2-69 138949
121 1DGI 5 4 VP4 POLIOVIRUS FRAGMENTS VP1,VP2,VP3,VP4 138950
122 1D3E 5 4 PROTEIN (RHINOVIRUS 16 COAT PROTEIN VP4) 169066
123 1D3I 5 4 PROTEIN (RHINOVIRUS 14 COAT PROTEIN VP4) 169066
124 1VRH 4 4 RHINOVIRUS 14 147712
125 1RUC 4 4 RHINOVIRUS 14 147712
126 1RUD 4 4 RHINOVIRUS 14 147712
127 1RUE 4 4 RHINOVIRUS 14 147712
128 1RUF 4 4 RHINOVIRUS 14 147712
129 1RUG 4 4 RHINOVIRUS 14 147712
130 1RUH 4 4 RHINOVIRUS 14 147712
131 1RUI 4 4 RHINOVIRUS 14 147712
132 1RUJ 4 4 RHINOVIRUS 14 147712
133 1HRV 4 4 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4) 147712
134 2HWB 4 4 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4) 147712
135 2HWC 4 4 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4) 147712
136 1HRI 4 4 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4) 147712
137 1R09 4 4 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4) 147712
138 1R08 4 4 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4) 147712
139 1RMU 4 4 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4) 147712
140 2R04 4 4 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4) 147712
141 2R06 4 4 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4) 147712
142 2R07 4 4 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4) 147712
143 2RM2 4 4 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4) 147712
144 2RMU 4 4 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4) 147712
145 2RR1 4 4 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4) 147712
146 2RS1 4 4 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4) 169066
147 2RS3 4 4 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4) 147712
148 2RS5 4 4 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4) 147712