6ILL

Cryo-EM structure of Echovirus 6 complexed with its uncoating receptor FcRn at PH 5.5


Sequence Similarity Clusters for the Entities in PDB 6ILL

Entity #1 | Chains: A
Capsid protein VP1 protein, length: 273 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 6 17510
95 % 1 6 15716
90 % 1 6 14145
70 % 8 16 5260
50 % 11 29 924
40 % 118 234 197
30 % 120 238 207
Entity #2 | Chains: B
Capsid protein VP2 protein, length: 252 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 13955
95 % 1 7 13479
90 % 1 7 13270
70 % 11 31 868
50 % 112 235 199
40 % 112 235 213
30 % 117 248 215
Entity #3 | Chains: C
Capsid protein VP3 protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 6 16286
95 % 1 7 13442
90 % 1 7 13226
70 % 11 31 865
50 % 119 245 177
40 % 121 249 186
30 % 142 291 131
Entity #4 | Chains: D
Capsid protein VP4 protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 50828
95 % 3 8 10551
90 % 10 20 4194
70 % 31 81 847
50 % 90 161 418
40 % 90 161 446
30 % 90 161 464

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

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Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4Q4W 4 4 Coxsackievirus capsid protein VP4 138950
2 4Q4X 4 4 Coxsackievirus capsid protein VP4 138950
3 4Q4Y 4 4 Coxsackievirus capsid protein VP4 138950
4 6T4C 4 D VP4 1330520 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
5 6T48 4 D VP4 1330520 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
6 1AYM 4 4 HUMAN RHINOVIRUS 16 COAT PROTEIN 169066
7 4WM8 4 D VP4 138951
8 5BNP 4 D Capsid protein VP4 UNP residues 2-69 138951
9 1PVC 5 4 POLIOVIRUS TYPE 3, SABIN STRAIN P3/SABIN P3/LEON/12A(1)B 138950
10 5BNO 4 D Capsid protein VP4 UNP residues 2-69 138951
11 1FPN 4 4 COAT PROTEIN VP4 147711
12 5OSN 4 D Capsid protein 12064
13 1ND2 4 D coat protein VP4 147711
14 4WM7 4 D VP4 138951
15 1HXS 4 4 GENOME POLYPROTEIN, COAT PROTEIN VP4 RESIDUES 1-68 138950
16 5BNN 4 D Capsid protein VP4 UNP residues 2-69 138951
17 1NCQ 4 D COAT PROTEIN VP4 147712
18 1D4M 4 4 PROTEIN (COXSACKIEVIRUS A9) VP4 138949
19 4RHV 4 4 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4) 147712
20 1EAH 4 4 POLIOVIRUS TYPE 2 COAT PROTEINS VP1 TO VP4 138950
21 4Q4V 4 4 Coxsackievirus capsid protein VP4 138950
22 1K5M 4 D COAT PROTEIN VP4 (P1A) 147712
23 1QJU 4 4 PROTEIN VP4 RESIDUE 1 OF CHAIN 4 MYRISTOYLATED (RESIDUE 4000 IS MYRISTATE) ANTIVIRAL COMPOUND VP61209 (FORMERLY WIN 61209) LOCATED IN A POCKET IN VIRAL PROTEIN WITH A POSSIBLE ZINC, LOCATED ON FIVE FOLD AXES RESIDUES 2-69 147711
24 2PLV 4 4 HUMAN POLIOVIRUS TYPE 1 (SUBUNIT VP4) 138950
25 4PDW 4 D Capsid protein VP4/VP2 residue 2-69 147712
26 4CDQ 4 D VP4 138948
27 3ZFE 4 D VP4 VIRION OF HUMAN ENTEROVIRUS 71 138948
28 1QJX 4 4 PROTEIN VP4 RESIDUE 1 OF CHAIN 4 MYRISTOYLATED (RESIDUE 4000 IS MYRISTATE) ANTIVIRAL COMPOUND VP61209 (FORMERLY WIN 61209) LOCATED IN A POCKET IN VIRAL PROTEIN WITH A POSSIBLE ZINC, LOCATED ON FIVE FOLD AXES RESIDUES 2-69 147711
29 1QJY 4 4 PROTEIN VP4 RESIDUE 1 OF CHAIN 4 MYRISTOYLATED (RESIDUE 4000 IS MYRISTATE) ANTIVIRAL COMPOUND VP61209 (FORMERLY WIN 61209) LOCATED IN A POCKET IN VIRAL PROTEIN WITH A POSSIBLE ZINC, LOCATED ON FIVE FOLD AXES RESIDUES 2-69 147711
30 1NCR 4 D coat protein VP4 147711
31 1AYN 4 4 HUMAN RHINOVIRUS 16 COAT PROTEIN 169066
32 1AR7 5 4 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
33 1ND3 4 D coat protein VP4 147711
34 1BEV 4 4 BOVINE ENTEROVIRUS COAT PROTEINS VP1 TO VP4 12064
35 1AL2 5 4 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
36 1PO1 5 4 POLIOVIRUS TYPE 1 MAHONEY 138950
37 1AR9 5 4 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
38 5C4W 4 D VP4 138948
39 1H8T 4 D ECHOVIRUS 11 COAT PROTEIN VP4 138949
40 1PO2 5 4 POLIOVIRUS TYPE 1 MAHONEY 138950
41 1ASJ 5 4 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
42 1Z7S 4 4 Human coxsackievirus A21 Viral Protein 4 138950
43 1OOP 4 D Coat protein VP4 138949
44 4CDX 4 D VP4 138948
45 3VDD 4 D Protein VP4 UNP residues 1-69 147711
46 1NA1 4 D Coat protein VP4 147712
47 4CDU 4 D VP4 138948
48 1VBB 5 4 POLIOVIRUS TYPE 3 138950
49 1AR6 5 4 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
50 1AR8 5 4 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
51 4N53 4 D Capsid protein VP4 138948
52 4CDW 4 D VP4 138948
53 4CEY 4 D VP4 138948
54 1VBC 5 4 POLIOVIRUS TYPE 3 138950
55 3ZFG 4 D VP4 VIRION OF HUMAN ENTEROVIRUS 71 138948
56 1VBE 5 4 POLIOVIRUS TYPE 3 138950
57 4CEW 4 D VP4 138948
58 5ABJ 4 D VP4 UNP RESIDUES 1-69 138948
59 1VBD 5 4 POLIOVIRUS TYPE 1 MAHONEY P1/MAHONEY 138950
60 3ZFF 4 D VP4 138948
61 1RHI 4 4 HUMAN RHINOVIRUS 3 COAT PROTEIN 147712
62 1VBA 5 4 POLIOVIRUS TYPE 3 138950
63 1MQT 4 D Polyprotein Capsid Protein SVDV COAT PROTEIN VP4 138949
64 1RVF 4 4 HUMAN RHINOVIRUS 14 COAT PROTEIN 169066
65 4GB3 4 4 coat protein 4 UNP residues 2-69 138949
66 2X5I 4 D VP4 138949
67 1PIV 5 4 POLIOVIRUS TYPE 3 (SUBUNIT VP4) 138950
68 1COV 4 4 COXSACKIEVIRUS COAT PROTEIN 138949
69 1EV1 4 4 ECHOVIRUS 1 VP1, VP2, VP3, VP4 138949
70 1V9U 4 4 Coat protein VP4 147711
71 4AED 4 D VP4 138948
72 3DPR 4 D Protein VP4 147711
73 6LQD 4 D Capsid protein VP4 138948 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
74 6LHK 4 D VP4 protein 138948
75 6LHP 6 D VP4 protein 138948
76 6LHQ 4 D VP4 protein 138948
77 6LHA 4 D VP4 protein 138948
78 6UH1 4 D VP4 138948 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
79 6UH6 4 D VP4 138948 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
80 6UH7 4 D VP4 138948 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
81 6SNW 4 D Coxsackievirus VP4 138948 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
82 6SMG 4 D Capsid protein VP4 138948 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
83 6SK5 1 D Rhinovirus B5 VP4 147712
84 6SK6 1 D Rhinovirus B5 VP4 147712
85 6SK7 4 D VP4 capsid protein 147711
86 6PSF 4 D Capsid protein VP4 UNP residues 2-67 463676 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
87 6PPO 4 D Capsid protein VP4 UNP residues 2-67 463676 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
88 6RJF 4 4 VP4 138949
89 6MZI 4 D viral protein 4 UNP residues 2-69 138951
90 6ILL 4 D Capsid protein VP4 138949
91 6ILM 4 D Capsid protein VP4 138949
92 6ILN 4 D Capsid protein VP4 138949
93 6ILP 4 D Capsid protein VP4 138949
94 6ILJ 4 D Capsid protein VP4 138949
95 6ILK 4 D Capsid protein VP4 138949
96 6IIJ 4 D VP4 138948
97 6AKS 4 D VP4 138948
98 6AJ0 4 D Capsid protein VP4 138951
99 6HBG 4 D Echovirus 18 viral protein 4 138949
100 6AD0 6 D VP4 138948
101 6ACU 4 D VP4 138948
102 6GZV 4 D Capsid protein VP4 138949 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
103 6CV1 4 D viral protein 4 UNP residues 2-69 138951
104 6CV2 4 D viral protein 4 UNP residues 2-69 138951
105 6CV5 4 D viral protein 4 UNP residues 2-69 138951
106 6CVB 4 D viral protein 4 UNP residues 2-69 138951
107 6CSG 4 D viral protein 4 UNP residues 2-69 138951
108 6CRP 4 D viral protein 4 UNP residues 2-69 138951
109 6CRR 4 D viral protein 4 UNP residues 2-69 138951
110 6CS3 4 D viral protein 4 UNP residues 2-69 138951
111 5W3L 4 D viral protein 4 UNP residues 2-69 147712
112 5W3M 6 D viral protein 4 UNP residues 2-69 147712
113 5W3E 6 D viral protein 4 UNP residues 2-69 147712
114 5O5P 4 4 Genome polyprotein 138950 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
115 5O5B 4 4 VP4 138950 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
116 5K0U 4 D Capsid protein VP4 UNP residues 2-67 463676
117 3JD7 4 4 Capsid protein VP4 UNP residues 2-69 138949
118 3JBC 4 4 Capsid protein VP4 UNP residues 2-69 138950
119 3JBD 4 4 Capsid protein VP4 UNP residues 2-69 138950
120 3JBE 4 4 Capsid protein VP4 UNP residues 2-69 138950
121 3JBF 4 4 Capsid protein VP4 UNP residues 2-69 138950
122 3JBG 4 4 Capsid protein VP4 UNP residues 2-69 138950
123 3J9F 4 4 Protein VP4 UNP residues 2-69 138950
124 3J8F 4 4 Capsid protein VP4 UNP residues 2-69 138950
125 4C10 6 D VP4 138948
126 3J3O 7 4 Protein VP4 UNP residues 2-69 138950
127 3IYP 4 D Polyprotein 138949
128 3EPC 4 4 Protein VP4 138950
129 3EPD 5 4 protein VP4 138950
130 3EPF 4 4 Protein VP4 138950
131 1UPN 4 D ECHOVIRUS 11 COAT PROTEIN VP4 STRUCTURE OF ECHOVIRUS TYPE 11 FITTED INTO CRYO-EM ELECTRON DENSITY FOR ECHOVIRUS TYPE 12. THE EM DENSITY HAS BEEN DEPOSITED IN THE EMDB, WITH ACCESSION CODE 1057 138949
132 1NN8 5 4 coat protein VP4 138950
133 1JEW 5 4 COXSACKIEVIRUS CAPSID, COAT PROTEIN VP4 Residues 2-69 138949
134 1DGI 5 4 VP4 POLIOVIRUS FRAGMENTS VP1,VP2,VP3,VP4 138950
135 1D3E 5 4 PROTEIN (RHINOVIRUS 16 COAT PROTEIN VP4) 169066
136 1D3I 5 4 PROTEIN (RHINOVIRUS 14 COAT PROTEIN VP4) 169066
137 1VRH 4 4 RHINOVIRUS 14 147712
138 1RUC 4 4 RHINOVIRUS 14 147712
139 1RUD 4 4 RHINOVIRUS 14 147712
140 1RUE 4 4 RHINOVIRUS 14 147712
141 1RUF 4 4 RHINOVIRUS 14 147712
142 1RUG 4 4 RHINOVIRUS 14 147712
143 1RUH 4 4 RHINOVIRUS 14 147712
144 1RUI 4 4 RHINOVIRUS 14 147712
145 1RUJ 4 4 RHINOVIRUS 14 147712
146 1HRV 4 4 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4) 147712
147 2HWB 4 4 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4) 147712
148 2HWC 4 4 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4) 147712
149 1HRI 4 4 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4) 147712
150 1R09 4 4 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4) 147712
151 1R08 4 4 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4) 147712
152 1RMU 4 4 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4) 147712
153 2R04 4 4 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4) 147712
154 2R06 4 4 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4) 147712
155 2R07 4 4 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4) 147712
156 2RM2 4 4 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4) 147712
157 2RMU 4 4 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4) 147712
158 2RR1 4 4 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4) 147712
159 2RS1 4 4 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4) 169066
160 2RS3 4 4 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4) 147712
161 2RS5 4 4 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4) 147712