Sequence Similarity Clusters for the Entities in PDB 6ILL

Entity #1 | Chains: A
Capsid protein VP1 protein, length: 273 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 6 16441
95 % 1 6 16230
90 % 1 6 14580
70 % 8 16 5156
50 % 11 29 853
40 % 98 213 202
30 % 98 213 211
Entity #2 | Chains: B
Capsid protein VP2 protein, length: 252 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 13119
95 % 1 7 12349
90 % 1 7 12471
70 % 11 31 806
50 % 91 213 199
40 % 91 213 213
30 % 96 226 214
Entity #3 | Chains: C
Capsid protein VP3 protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 6 16709
95 % 1 7 12798
90 % 1 7 12638
70 % 11 31 808
50 % 100 225 179
40 % 100 227 192
30 % 121 268 128
Entity #4 | Chains: D
Capsid protein VP4 protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 38210
95 % 3 8 9947
90 % 10 20 3976
70 % 42 96 640
50 % 76 148 427
40 % 76 148 446
30 % 76 148 463

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

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Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4Q4W 4 4 Coxsackievirus capsid protein VP4 138950
2 4Q4X 4 4 Coxsackievirus capsid protein VP4 138950
3 4Q4Y 4 4 Coxsackievirus capsid protein VP4 138950
4 1AYM 4 4 HUMAN RHINOVIRUS 16 COAT PROTEIN 169066
5 4WM8 4 D VP4 138951
6 5BNP 4 D Capsid protein VP4 UNP residues 2-69 138951
7 1PVC 5 4 POLIOVIRUS TYPE 3, SABIN STRAIN P3/SABIN P3/LEON/12A(1)B 138950
8 5BNO 4 D Capsid protein VP4 UNP residues 2-69 138951
9 1FPN 4 4 COAT PROTEIN VP4 147711
10 5OSN 4 D Capsid protein 12064
11 1ND2 4 D coat protein VP4 147711
12 4WM7 4 D VP4 138951
13 1HXS 4 4 GENOME POLYPROTEIN, COAT PROTEIN VP4 RESIDUES 1-68 138950
14 5BNN 4 D Capsid protein VP4 UNP residues 2-69 138951
15 1NCQ 4 D COAT PROTEIN VP4 147712
16 1D4M 4 4 PROTEIN (COXSACKIEVIRUS A9) VP4 138949
17 4RHV 4 4 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4) 147712
18 1EAH 4 4 POLIOVIRUS TYPE 2 COAT PROTEINS VP1 TO VP4 138950
19 4Q4V 4 4 Coxsackievirus capsid protein VP4 138950
20 1K5M 4 D COAT PROTEIN VP4 (P1A) 147712
21 1QJU 4 4 PROTEIN VP4 RESIDUE 1 OF CHAIN 4 MYRISTOYLATED (RESIDUE 4000 IS MYRISTATE) ANTIVIRAL COMPOUND VP61209 (FORMERLY WIN 61209) LOCATED IN A POCKET IN VIRAL PROTEIN WITH A POSSIBLE ZINC, LOCATED ON FIVE FOLD AXES RESIDUES 2-69 147711
22 2PLV 4 4 HUMAN POLIOVIRUS TYPE 1 (SUBUNIT VP4) 138950
23 4PDW 4 D Capsid protein VP4/VP2 residue 2-69 147712
24 4CDQ 4 D VP4 138948
25 3ZFE 4 D VP4 VIRION OF HUMAN ENTEROVIRUS 71 138948
26 1QJX 4 4 PROTEIN VP4 RESIDUE 1 OF CHAIN 4 MYRISTOYLATED (RESIDUE 4000 IS MYRISTATE) ANTIVIRAL COMPOUND VP61209 (FORMERLY WIN 61209) LOCATED IN A POCKET IN VIRAL PROTEIN WITH A POSSIBLE ZINC, LOCATED ON FIVE FOLD AXES RESIDUES 2-69 147711
27 1QJY 4 4 PROTEIN VP4 RESIDUE 1 OF CHAIN 4 MYRISTOYLATED (RESIDUE 4000 IS MYRISTATE) ANTIVIRAL COMPOUND VP61209 (FORMERLY WIN 61209) LOCATED IN A POCKET IN VIRAL PROTEIN WITH A POSSIBLE ZINC, LOCATED ON FIVE FOLD AXES RESIDUES 2-69 147711
28 1NCR 4 D coat protein VP4 147711
29 1AYN 4 4 HUMAN RHINOVIRUS 16 COAT PROTEIN 169066
30 1AR7 5 4 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
31 1ND3 4 D coat protein VP4 147711
32 1BEV 4 4 BOVINE ENTEROVIRUS COAT PROTEINS VP1 TO VP4 12064
33 1AL2 5 4 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
34 1PO1 5 4 POLIOVIRUS TYPE 1 MAHONEY 138950
35 1AR9 5 4 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
36 5C4W 4 D VP4 138948
37 1H8T 4 D ECHOVIRUS 11 COAT PROTEIN VP4 138949
38 1PO2 5 4 POLIOVIRUS TYPE 1 MAHONEY 138950
39 1ASJ 5 4 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
40 1Z7S 4 4 Human coxsackievirus A21 Viral Protein 4 138950
41 1OOP 4 D Coat protein VP4 138949
42 4CDX 4 D VP4 138948
43 3VDD 4 D Protein VP4 UNP residues 1-69 147711
44 1NA1 4 D Coat protein VP4 147712
45 4CDU 4 D VP4 138948
46 1VBB 5 4 POLIOVIRUS TYPE 3 138950
47 1AR6 5 4 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
48 1AR8 5 4 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
49 4N53 4 D Capsid protein VP4 138948
50 4CDW 4 D VP4 138948
51 4CEY 4 D VP4 138948
52 1VBC 5 4 POLIOVIRUS TYPE 3 138950
53 3ZFG 4 D VP4 VIRION OF HUMAN ENTEROVIRUS 71 138948
54 1VBE 5 4 POLIOVIRUS TYPE 3 138950
55 4CEW 4 D VP4 138948
56 5ABJ 4 D VP4 UNP RESIDUES 1-69 138948
57 1VBD 5 4 POLIOVIRUS TYPE 1 MAHONEY P1/MAHONEY 138950
58 3ZFF 4 D VP4 138948
59 1RHI 4 4 HUMAN RHINOVIRUS 3 COAT PROTEIN 147712
60 1VBA 5 4 POLIOVIRUS TYPE 3 138950
61 1MQT 4 D Polyprotein Capsid Protein SVDV COAT PROTEIN VP4 138949
62 1RVF 4 4 HUMAN RHINOVIRUS 14 COAT PROTEIN 169066
63 4GB3 4 4 coat protein 4 UNP residues 2-69 138949
64 2X5I 4 D VP4 138949
65 1PIV 5 4 POLIOVIRUS TYPE 3 (SUBUNIT VP4) 138950
66 1COV 4 4 COXSACKIEVIRUS COAT PROTEIN 138949
67 1EV1 4 4 ECHOVIRUS 1 VP1, VP2, VP3, VP4 138949
68 1V9U 4 4 Coat protein VP4 147711
69 4AED 4 D VP4 138948
70 3DPR 4 D Protein VP4 147711
71 6SK5 1 D Rhinovirus B5 VP4 147712
72 6SK6 1 D Rhinovirus B5 VP4 147712
73 6SK7 4 D VP4 capsid protein 147711
74 6RJF 4 4 VP4 138949
75 6MZI 4 D viral protein 4 UNP residues 2-69 138951
76 6ILL 4 D Capsid protein VP4 138949
77 6ILM 4 D Capsid protein VP4 138949
78 6ILN 4 D Capsid protein VP4 138949
79 6ILP 4 D Capsid protein VP4 138949
80 6ILJ 4 D Capsid protein VP4 138949
81 6ILK 4 D Capsid protein VP4 138949
82 6IIJ 4 D VP4 138948
83 6AKS 4 D VP4 138948
84 6AJ0 4 D Capsid protein VP4 138951
85 6HBG 4 D Echovirus 18 viral protein 4 138949
86 6AD0 6 D VP4 138948
87 6ACU 4 D VP4 138948
88 6GZV 4 D Capsid protein VP4 138949 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
89 6DIJ 4 D VP4 138948
90 6CV1 4 D viral protein 4 UNP residues 2-69 138951
91 6CV2 4 D viral protein 4 UNP residues 2-69 138951
92 6CV5 4 D viral protein 4 UNP residues 2-69 138951
93 6CVB 4 D viral protein 4 UNP residues 2-69 138951
94 6CSG 4 D viral protein 4 UNP residues 2-69 138951
95 6CRP 4 D viral protein 4 UNP residues 2-69 138951
96 6CRR 4 D viral protein 4 UNP residues 2-69 138951
97 6CS3 4 D viral protein 4 UNP residues 2-69 138951
98 5W3L 4 D viral protein 4 UNP residues 2-69 147712
99 5W3M 6 D viral protein 4 UNP residues 2-69 147712
100 5W3E 6 D viral protein 4 UNP residues 2-69 147712
101 5O5P 4 4 Genome polyprotein 138950 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
102 5O5B 4 4 VP4 138950 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
103 5K0U 4 D Capsid protein VP4 UNP residues 2-67 463676
104 3JD7 4 4 Capsid protein VP4 UNP residues 2-69 138949
105 3JBC 4 4 Capsid protein VP4 UNP residues 2-69 138950
106 3JBD 4 4 Capsid protein VP4 UNP residues 2-69 138950
107 3JBE 4 4 Capsid protein VP4 UNP residues 2-69 138950
108 3JBF 4 4 Capsid protein VP4 UNP residues 2-69 138950
109 3JBG 4 4 Capsid protein VP4 UNP residues 2-69 138950
110 3J9F 4 4 Protein VP4 UNP residues 2-69 138950
111 3J8F 4 4 Capsid protein VP4 UNP residues 2-69 138950
112 4C10 6 D VP4 138948
113 3J3O 7 4 Protein VP4 UNP residues 2-69 138950
114 3IYP 4 D Polyprotein 138949
115 3EPC 4 4 Protein VP4 138950
116 3EPD 5 4 protein VP4 138950
117 3EPF 4 4 Protein VP4 138950
118 1UPN 4 D ECHOVIRUS 11 COAT PROTEIN VP4 STRUCTURE OF ECHOVIRUS TYPE 11 FITTED INTO CRYO-EM ELECTRON DENSITY FOR ECHOVIRUS TYPE 12. THE EM DENSITY HAS BEEN DEPOSITED IN THE EMDB, WITH ACCESSION CODE 1057 138949
119 1NN8 5 4 coat protein VP4 138950
120 1JEW 5 4 COXSACKIEVIRUS CAPSID, COAT PROTEIN VP4 Residues 2-69 138949
121 1DGI 5 4 VP4 POLIOVIRUS FRAGMENTS VP1,VP2,VP3,VP4 138950
122 1D3E 5 4 PROTEIN (RHINOVIRUS 16 COAT PROTEIN VP4) 169066
123 1D3I 5 4 PROTEIN (RHINOVIRUS 14 COAT PROTEIN VP4) 169066
124 1VRH 4 4 RHINOVIRUS 14 147712
125 1RUC 4 4 RHINOVIRUS 14 147712
126 1RUD 4 4 RHINOVIRUS 14 147712
127 1RUE 4 4 RHINOVIRUS 14 147712
128 1RUF 4 4 RHINOVIRUS 14 147712
129 1RUG 4 4 RHINOVIRUS 14 147712
130 1RUH 4 4 RHINOVIRUS 14 147712
131 1RUI 4 4 RHINOVIRUS 14 147712
132 1RUJ 4 4 RHINOVIRUS 14 147712
133 1HRV 4 4 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4) 147712
134 2HWB 4 4 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4) 147712
135 2HWC 4 4 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4) 147712
136 1HRI 4 4 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4) 147712
137 1R09 4 4 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4) 147712
138 1R08 4 4 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4) 147712
139 1RMU 4 4 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4) 147712
140 2R04 4 4 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4) 147712
141 2R06 4 4 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4) 147712
142 2R07 4 4 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4) 147712
143 2RM2 4 4 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4) 147712
144 2RMU 4 4 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4) 147712
145 2RR1 4 4 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4) 147712
146 2RS1 4 4 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4) 169066
147 2RS3 4 4 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4) 147712
148 2RS5 4 4 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4) 147712