Sequence Similarity Clusters for the Entities in PDB 6ILL

Entity #1 | Chains: A
Capsid protein VP1 protein, length: 273 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 6 15327
95 % 1 6 14680
90 % 1 6 14444
70 % 8 16 4806
50 % 11 29 833
40 % 87 167 233
30 % 94 206 211
Entity #2 | Chains: B
Capsid protein VP2 protein, length: 252 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 12534
95 % 1 7 12332
90 % 1 7 12200
70 % 11 31 758
50 % 87 204 202
40 % 87 204 214
30 % 92 217 215
Entity #3 | Chains: C
Capsid protein VP3 protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 6 13213
95 % 1 7 11980
90 % 1 7 11749
70 % 11 31 760
50 % 96 216 180
40 % 96 218 191
30 % 117 259 129
Entity #4 | Chains: D
Capsid protein VP4 protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 46630
95 % 3 8 9648
90 % 10 20 3817
70 % 29 79 764
50 % 72 141 431
40 % 72 141 452
30 % 72 141 473

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

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Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4Q4W 4 4 Coxsackievirus capsid protein VP4 138950
2 4Q4X 4 4 Coxsackievirus capsid protein VP4 138950
3 4Q4Y 4 4 Coxsackievirus capsid protein VP4 138950
4 1AYM 4 4 HUMAN RHINOVIRUS 16 COAT PROTEIN 169066
5 4WM8 4 D VP4 138951
6 5BNP 4 D Capsid protein VP4 UNP residues 2-69 138951
7 1PVC 5 4 POLIOVIRUS TYPE 3, SABIN STRAIN P3/SABIN P3/LEON/12A(1)B 138950
8 5BNO 4 D Capsid protein VP4 UNP residues 2-69 138951
9 1FPN 4 4 COAT PROTEIN VP4 147711
10 1ND2 4 D coat protein VP4 147711
11 4WM7 4 D VP4 138951
12 1HXS 4 4 GENOME POLYPROTEIN, COAT PROTEIN VP4 RESIDUES 1-68 138950
13 5BNN 4 D Capsid protein VP4 UNP residues 2-69 138951
14 1NCQ 4 D COAT PROTEIN VP4 147712
15 1D4M 4 4 PROTEIN (COXSACKIEVIRUS A9) VP4 138949
16 4RHV 4 4 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4) 147712
17 1EAH 4 4 POLIOVIRUS TYPE 2 COAT PROTEINS VP1 TO VP4 138950
18 4Q4V 4 4 Coxsackievirus capsid protein VP4 138950
19 1K5M 4 D COAT PROTEIN VP4 (P1A) 147712
20 1QJU 4 4 PROTEIN VP4 RESIDUE 1 OF CHAIN 4 MYRISTOYLATED (RESIDUE 4000 IS MYRISTATE) ANTIVIRAL COMPOUND VP61209 (FORMERLY WIN 61209) LOCATED IN A POCKET IN VIRAL PROTEIN WITH A POSSIBLE ZINC, LOCATED ON FIVE FOLD AXES RESIDUES 2-69 147711
21 2PLV 4 4 HUMAN POLIOVIRUS TYPE 1 (SUBUNIT VP4) 138950
22 4PDW 4 D Capsid protein VP4/VP2 residue 2-69 147712
23 4CDQ 4 D VP4 138948
24 3ZFE 4 D VP4 VIRION OF HUMAN ENTEROVIRUS 71 138948
25 1QJX 4 4 PROTEIN VP4 RESIDUE 1 OF CHAIN 4 MYRISTOYLATED (RESIDUE 4000 IS MYRISTATE) ANTIVIRAL COMPOUND VP61209 (FORMERLY WIN 61209) LOCATED IN A POCKET IN VIRAL PROTEIN WITH A POSSIBLE ZINC, LOCATED ON FIVE FOLD AXES RESIDUES 2-69 147711
26 1QJY 4 4 PROTEIN VP4 RESIDUE 1 OF CHAIN 4 MYRISTOYLATED (RESIDUE 4000 IS MYRISTATE) ANTIVIRAL COMPOUND VP61209 (FORMERLY WIN 61209) LOCATED IN A POCKET IN VIRAL PROTEIN WITH A POSSIBLE ZINC, LOCATED ON FIVE FOLD AXES RESIDUES 2-69 147711
27 1NCR 4 D coat protein VP4 147711
28 1AYN 4 4 HUMAN RHINOVIRUS 16 COAT PROTEIN 169066
29 1AR7 5 4 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
30 1ND3 4 D coat protein VP4 147711
31 1BEV 4 4 BOVINE ENTEROVIRUS COAT PROTEINS VP1 TO VP4 12064
32 1AL2 5 4 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
33 1PO1 5 4 POLIOVIRUS TYPE 1 MAHONEY 138950
34 1AR9 5 4 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
35 5C4W 4 D VP4 138948
36 1H8T 4 D ECHOVIRUS 11 COAT PROTEIN VP4 138949
37 1PO2 5 4 POLIOVIRUS TYPE 1 MAHONEY 138950
38 1ASJ 5 4 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
39 1Z7S 4 4 Human coxsackievirus A21 Viral Protein 4 138950
40 1OOP 4 D Coat protein VP4 138949
41 4CDX 4 D VP4 138948
42 3VDD 4 D Protein VP4 UNP residues 1-69 147711
43 1NA1 4 D Coat protein VP4 147712
44 4CDU 4 D VP4 138948
45 1VBB 5 4 POLIOVIRUS TYPE 3 138950
46 1AR6 5 4 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
47 1AR8 5 4 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
48 4N53 4 D Capsid protein VP4 138948
49 4CDW 4 D VP4 138948
50 4CEY 4 D VP4 138948
51 1VBC 5 4 POLIOVIRUS TYPE 3 138950
52 3ZFG 4 D VP4 VIRION OF HUMAN ENTEROVIRUS 71 138948
53 1VBE 5 4 POLIOVIRUS TYPE 3 138950
54 4CEW 4 D VP4 138948
55 5ABJ 4 D VP4 UNP RESIDUES 1-69 138948
56 1VBD 5 4 POLIOVIRUS TYPE 1 MAHONEY P1/MAHONEY 138950
57 3ZFF 4 D VP4 138948
58 1RHI 4 4 HUMAN RHINOVIRUS 3 COAT PROTEIN 147712
59 1VBA 5 4 POLIOVIRUS TYPE 3 138950
60 1MQT 4 D Polyprotein Capsid Protein SVDV COAT PROTEIN VP4 138949
61 1RVF 4 4 HUMAN RHINOVIRUS 14 COAT PROTEIN 169066
62 4GB3 4 4 coat protein 4 UNP residues 2-69 138949
63 2X5I 4 D VP4 138949
64 1PIV 5 4 POLIOVIRUS TYPE 3 (SUBUNIT VP4) 138950
65 1COV 4 4 COXSACKIEVIRUS COAT PROTEIN 138949
66 1EV1 4 4 ECHOVIRUS 1 VP1, VP2, VP3, VP4 138949
67 1V9U 4 4 Coat protein VP4 147711
68 4AED 4 D VP4 138948
69 3DPR 4 D Protein VP4 147711
70 6RJF 4 4 VP4 138949
71 6MZI 4 D viral protein 4 UNP residues 2-69 138951
72 6ILL 4 D Capsid protein VP4 138949
73 6ILM 4 D Capsid protein VP4 138949
74 6ILN 4 D Capsid protein VP4 138949
75 6ILP 4 D Capsid protein VP4 138949
76 6ILJ 4 D Capsid protein VP4 138949
77 6ILK 4 D Capsid protein VP4 138949
78 6IIJ 4 D VP4 138948
79 6AKS 4 D VP4 138948
80 6AJ0 4 D Capsid protein VP4 138951
81 6HBG 4 D Echovirus 18 viral protein 4 138949
82 6AD0 6 D VP4 138948
83 6ACU 4 D VP4 138948
84 6GZV 4 D Capsid protein VP4 138949 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
85 6DIJ 4 D VP4 138948
86 6CSG 4 D viral protein 4 UNP residues 2-69 138951
87 6CRP 4 D viral protein 4 UNP residues 2-69 138951
88 6CRR 4 D viral protein 4 UNP residues 2-69 138951
89 6CS3 4 D viral protein 4 UNP residues 2-69 138951
90 5OSN 4 D Capsid protein 12064
91 5W3L 4 D viral protein 4 UNP residues 2-69 147712
92 5W3M 6 D viral protein 4 UNP residues 2-69 147712
93 5W3E 6 D viral protein 4 UNP residues 2-69 147712
94 5O5P 4 4 Genome polyprotein 138950 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
95 5O5B 4 4 VP4 138950 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
96 5K0U 4 D Capsid protein VP4 UNP residues 2-67 463676
97 3JD7 4 4 Capsid protein VP4 UNP residues 2-69 138949
98 3JBC 4 4 Capsid protein VP4 UNP residues 2-69 138950
99 3JBD 4 4 Capsid protein VP4 UNP residues 2-69 138950
100 3JBE 4 4 Capsid protein VP4 UNP residues 2-69 138950
101 3JBF 4 4 Capsid protein VP4 UNP residues 2-69 138950
102 3JBG 4 4 Capsid protein VP4 UNP residues 2-69 138950
103 3J9F 4 4 Protein VP4 UNP residues 2-69 138950
104 3J8F 4 4 Capsid protein VP4 UNP residues 2-69 138950
105 4C10 6 D VP4 138948
106 3J3O 7 4 Protein VP4 UNP residues 2-69 138950
107 3IYP 4 D Polyprotein 138949
108 3EPC 4 4 Protein VP4 138950
109 3EPD 5 4 protein VP4 138950
110 3EPF 4 4 Protein VP4 138950
111 1UPN 4 D ECHOVIRUS 11 COAT PROTEIN VP4 STRUCTURE OF ECHOVIRUS TYPE 11 FITTED INTO CRYO-EM ELECTRON DENSITY FOR ECHOVIRUS TYPE 12. THE EM DENSITY HAS BEEN DEPOSITED IN THE EMDB, WITH ACCESSION CODE 1057 138949
112 1NN8 5 4 coat protein VP4 138950
113 1JEW 5 4 COXSACKIEVIRUS CAPSID, COAT PROTEIN VP4 Residues 2-69 138949
114 1DGI 5 4 VP4 POLIOVIRUS FRAGMENTS VP1,VP2,VP3,VP4 138950
115 1D3E 5 4 PROTEIN (RHINOVIRUS 16 COAT PROTEIN VP4) 169066
116 1D3I 5 4 PROTEIN (RHINOVIRUS 14 COAT PROTEIN VP4) 169066
117 1VRH 4 4 RHINOVIRUS 14 147712
118 1RUC 4 4 RHINOVIRUS 14 147712
119 1RUD 4 4 RHINOVIRUS 14 147712
120 1RUE 4 4 RHINOVIRUS 14 147712
121 1RUF 4 4 RHINOVIRUS 14 147712
122 1RUG 4 4 RHINOVIRUS 14 147712
123 1RUH 4 4 RHINOVIRUS 14 147712
124 1RUI 4 4 RHINOVIRUS 14 147712
125 1RUJ 4 4 RHINOVIRUS 14 147712
126 1HRV 4 4 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4) 147712
127 2HWB 4 4 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4) 147712
128 2HWC 4 4 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4) 147712
129 1HRI 4 4 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4) 147712
130 1R09 4 4 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4) 147712
131 1R08 4 4 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4) 147712
132 1RMU 4 4 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4) 147712
133 2R04 4 4 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4) 147712
134 2R06 4 4 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4) 147712
135 2R07 4 4 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4) 147712
136 2RM2 4 4 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4) 147712
137 2RMU 4 4 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4) 147712
138 2RR1 4 4 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4) 147712
139 2RS1 4 4 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4) 169066
140 2RS3 4 4 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4) 147712
141 2RS5 4 4 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4) 147712