Sequence Similarity Clusters for the Entities in PDB 6ILL

Entity #1 | Chains: A
Capsid protein VP1 protein, length: 273 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 6 16801
95 % 1 6 14986
90 % 1 6 14830
70 % 8 16 5065
50 % 11 29 868
40 % 106 222 197
30 % 106 222 205
Entity #2 | Chains: B
Capsid protein VP2 protein, length: 252 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 13367
95 % 1 7 12917
90 % 1 7 12738
70 % 11 31 825
50 % 99 222 197
40 % 99 222 209
30 % 104 235 214
Entity #3 | Chains: C
Capsid protein VP3 protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 6 14838
95 % 1 7 13022
90 % 1 7 12769
70 % 11 31 824
50 % 8 23 953
40 % 108 236 189
30 % 129 278 128
Entity #4 | Chains: D
Capsid protein VP4 protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 54108
95 % 3 8 10164
90 % 10 20 4016
70 % 42 96 650
50 % 83 154 419
40 % 83 154 434
30 % 83 154 457

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4Q4W 4 4 Coxsackievirus capsid protein VP4 138950
2 4Q4X 4 4 Coxsackievirus capsid protein VP4 138950
3 4Q4Y 4 4 Coxsackievirus capsid protein VP4 138950
4 6T4C 4 D VP4 1330520 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
5 6T48 4 D VP4 1330520 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
6 1AYM 4 4 HUMAN RHINOVIRUS 16 COAT PROTEIN 169066
7 4WM8 4 D VP4 138951
8 5BNP 4 D Capsid protein VP4 UNP residues 2-69 138951
9 1PVC 5 4 POLIOVIRUS TYPE 3, SABIN STRAIN P3/SABIN P3/LEON/12A(1)B 138950
10 5BNO 4 D Capsid protein VP4 UNP residues 2-69 138951
11 1FPN 4 4 COAT PROTEIN VP4 147711
12 5OSN 4 D Capsid protein 12064
13 1ND2 4 D coat protein VP4 147711
14 4WM7 4 D VP4 138951
15 1HXS 4 4 GENOME POLYPROTEIN, COAT PROTEIN VP4 RESIDUES 1-68 138950
16 5BNN 4 D Capsid protein VP4 UNP residues 2-69 138951
17 1NCQ 4 D COAT PROTEIN VP4 147712
18 1D4M 4 4 PROTEIN (COXSACKIEVIRUS A9) VP4 138949
19 4RHV 4 4 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4) 147712
20 1EAH 4 4 POLIOVIRUS TYPE 2 COAT PROTEINS VP1 TO VP4 138950
21 4Q4V 4 4 Coxsackievirus capsid protein VP4 138950
22 1K5M 4 D COAT PROTEIN VP4 (P1A) 147712
23 1QJU 4 4 PROTEIN VP4 RESIDUE 1 OF CHAIN 4 MYRISTOYLATED (RESIDUE 4000 IS MYRISTATE) ANTIVIRAL COMPOUND VP61209 (FORMERLY WIN 61209) LOCATED IN A POCKET IN VIRAL PROTEIN WITH A POSSIBLE ZINC, LOCATED ON FIVE FOLD AXES RESIDUES 2-69 147711
24 2PLV 4 4 HUMAN POLIOVIRUS TYPE 1 (SUBUNIT VP4) 138950
25 4PDW 4 D Capsid protein VP4/VP2 residue 2-69 147712
26 4CDQ 4 D VP4 138948
27 3ZFE 4 D VP4 VIRION OF HUMAN ENTEROVIRUS 71 138948
28 1QJX 4 4 PROTEIN VP4 RESIDUE 1 OF CHAIN 4 MYRISTOYLATED (RESIDUE 4000 IS MYRISTATE) ANTIVIRAL COMPOUND VP61209 (FORMERLY WIN 61209) LOCATED IN A POCKET IN VIRAL PROTEIN WITH A POSSIBLE ZINC, LOCATED ON FIVE FOLD AXES RESIDUES 2-69 147711
29 1QJY 4 4 PROTEIN VP4 RESIDUE 1 OF CHAIN 4 MYRISTOYLATED (RESIDUE 4000 IS MYRISTATE) ANTIVIRAL COMPOUND VP61209 (FORMERLY WIN 61209) LOCATED IN A POCKET IN VIRAL PROTEIN WITH A POSSIBLE ZINC, LOCATED ON FIVE FOLD AXES RESIDUES 2-69 147711
30 1NCR 4 D coat protein VP4 147711
31 1AYN 4 4 HUMAN RHINOVIRUS 16 COAT PROTEIN 169066
32 1AR7 5 4 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
33 1ND3 4 D coat protein VP4 147711
34 1BEV 4 4 BOVINE ENTEROVIRUS COAT PROTEINS VP1 TO VP4 12064
35 1AL2 5 4 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
36 1PO1 5 4 POLIOVIRUS TYPE 1 MAHONEY 138950
37 1AR9 5 4 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
38 5C4W 4 D VP4 138948
39 1H8T 4 D ECHOVIRUS 11 COAT PROTEIN VP4 138949
40 1PO2 5 4 POLIOVIRUS TYPE 1 MAHONEY 138950
41 1ASJ 5 4 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
42 1Z7S 4 4 Human coxsackievirus A21 Viral Protein 4 138950
43 1OOP 4 D Coat protein VP4 138949
44 4CDX 4 D VP4 138948
45 3VDD 4 D Protein VP4 UNP residues 1-69 147711
46 1NA1 4 D Coat protein VP4 147712
47 4CDU 4 D VP4 138948
48 1VBB 5 4 POLIOVIRUS TYPE 3 138950
49 1AR6 5 4 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
50 1AR8 5 4 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
51 4N53 4 D Capsid protein VP4 138948
52 4CDW 4 D VP4 138948
53 4CEY 4 D VP4 138948
54 1VBC 5 4 POLIOVIRUS TYPE 3 138950
55 3ZFG 4 D VP4 VIRION OF HUMAN ENTEROVIRUS 71 138948
56 1VBE 5 4 POLIOVIRUS TYPE 3 138950
57 4CEW 4 D VP4 138948
58 5ABJ 4 D VP4 UNP RESIDUES 1-69 138948
59 1VBD 5 4 POLIOVIRUS TYPE 1 MAHONEY P1/MAHONEY 138950
60 3ZFF 4 D VP4 138948
61 1RHI 4 4 HUMAN RHINOVIRUS 3 COAT PROTEIN 147712
62 1VBA 5 4 POLIOVIRUS TYPE 3 138950
63 1MQT 4 D Polyprotein Capsid Protein SVDV COAT PROTEIN VP4 138949
64 1RVF 4 4 HUMAN RHINOVIRUS 14 COAT PROTEIN 169066
65 4GB3 4 4 coat protein 4 UNP residues 2-69 138949
66 2X5I 4 D VP4 138949
67 1PIV 5 4 POLIOVIRUS TYPE 3 (SUBUNIT VP4) 138950
68 1COV 4 4 COXSACKIEVIRUS COAT PROTEIN 138949
69 1EV1 4 4 ECHOVIRUS 1 VP1, VP2, VP3, VP4 138949
70 1V9U 4 4 Coat protein VP4 147711
71 4AED 4 D VP4 138948
72 3DPR 4 D Protein VP4 147711
73 6UH1 4 D VP4 138948 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
74 6UH6 4 D VP4 138948 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
75 6UH7 4 D VP4 138948 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
76 6SNW 4 D Coxsackievirus VP4 138948 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
77 6SMG 4 D Capsid protein VP4 138948 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
78 6SK5 1 D Rhinovirus B5 VP4 147712
79 6SK6 1 D Rhinovirus B5 VP4 147712
80 6SK7 4 D VP4 capsid protein 147711
81 6RJF 4 4 VP4 138949
82 6MZI 4 D viral protein 4 UNP residues 2-69 138951
83 6ILL 4 D Capsid protein VP4 138949
84 6ILM 4 D Capsid protein VP4 138949
85 6ILN 4 D Capsid protein VP4 138949
86 6ILP 4 D Capsid protein VP4 138949
87 6ILJ 4 D Capsid protein VP4 138949
88 6ILK 4 D Capsid protein VP4 138949
89 6IIJ 4 D VP4 138948
90 6AKS 4 D VP4 138948
91 6AJ0 4 D Capsid protein VP4 138951
92 6HBG 4 D Echovirus 18 viral protein 4 138949
93 6AD0 6 D VP4 138948
94 6ACU 4 D VP4 138948
95 6GZV 4 D Capsid protein VP4 138949 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
96 6CV1 4 D viral protein 4 UNP residues 2-69 138951
97 6CV2 4 D viral protein 4 UNP residues 2-69 138951
98 6CV5 4 D viral protein 4 UNP residues 2-69 138951
99 6CVB 4 D viral protein 4 UNP residues 2-69 138951
100 6CSG 4 D viral protein 4 UNP residues 2-69 138951
101 6CRP 4 D viral protein 4 UNP residues 2-69 138951
102 6CRR 4 D viral protein 4 UNP residues 2-69 138951
103 6CS3 4 D viral protein 4 UNP residues 2-69 138951
104 5W3L 4 D viral protein 4 UNP residues 2-69 147712
105 5W3M 6 D viral protein 4 UNP residues 2-69 147712
106 5W3E 6 D viral protein 4 UNP residues 2-69 147712
107 5O5P 4 4 Genome polyprotein 138950 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
108 5O5B 4 4 VP4 138950 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
109 5K0U 4 D Capsid protein VP4 UNP residues 2-67 463676
110 3JD7 4 4 Capsid protein VP4 UNP residues 2-69 138949
111 3JBC 4 4 Capsid protein VP4 UNP residues 2-69 138950
112 3JBD 4 4 Capsid protein VP4 UNP residues 2-69 138950
113 3JBE 4 4 Capsid protein VP4 UNP residues 2-69 138950
114 3JBF 4 4 Capsid protein VP4 UNP residues 2-69 138950
115 3JBG 4 4 Capsid protein VP4 UNP residues 2-69 138950
116 3J9F 4 4 Protein VP4 UNP residues 2-69 138950
117 3J8F 4 4 Capsid protein VP4 UNP residues 2-69 138950
118 4C10 6 D VP4 138948
119 3J3O 7 4 Protein VP4 UNP residues 2-69 138950
120 3IYP 4 D Polyprotein 138949
121 3EPC 4 4 Protein VP4 138950
122 3EPD 5 4 protein VP4 138950
123 3EPF 4 4 Protein VP4 138950
124 1UPN 4 D ECHOVIRUS 11 COAT PROTEIN VP4 STRUCTURE OF ECHOVIRUS TYPE 11 FITTED INTO CRYO-EM ELECTRON DENSITY FOR ECHOVIRUS TYPE 12. THE EM DENSITY HAS BEEN DEPOSITED IN THE EMDB, WITH ACCESSION CODE 1057 138949
125 1NN8 5 4 coat protein VP4 138950
126 1JEW 5 4 COXSACKIEVIRUS CAPSID, COAT PROTEIN VP4 Residues 2-69 138949
127 1DGI 5 4 VP4 POLIOVIRUS FRAGMENTS VP1,VP2,VP3,VP4 138950
128 1D3E 5 4 PROTEIN (RHINOVIRUS 16 COAT PROTEIN VP4) 169066
129 1D3I 5 4 PROTEIN (RHINOVIRUS 14 COAT PROTEIN VP4) 169066
130 1VRH 4 4 RHINOVIRUS 14 147712
131 1RUC 4 4 RHINOVIRUS 14 147712
132 1RUD 4 4 RHINOVIRUS 14 147712
133 1RUE 4 4 RHINOVIRUS 14 147712
134 1RUF 4 4 RHINOVIRUS 14 147712
135 1RUG 4 4 RHINOVIRUS 14 147712
136 1RUH 4 4 RHINOVIRUS 14 147712
137 1RUI 4 4 RHINOVIRUS 14 147712
138 1RUJ 4 4 RHINOVIRUS 14 147712
139 1HRV 4 4 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4) 147712
140 2HWB 4 4 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4) 147712
141 2HWC 4 4 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4) 147712
142 1HRI 4 4 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4) 147712
143 1R09 4 4 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4) 147712
144 1R08 4 4 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4) 147712
145 1RMU 4 4 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4) 147712
146 2R04 4 4 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4) 147712
147 2R06 4 4 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4) 147712
148 2R07 4 4 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4) 147712
149 2RM2 4 4 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4) 147712
150 2RMU 4 4 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4) 147712
151 2RR1 4 4 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4) 147712
152 2RS1 4 4 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4) 169066
153 2RS3 4 4 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4) 147712
154 2RS5 4 4 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4) 147712