Sequence Similarity Clusters for the Entities in PDB 6ILL

Entity #1 | Chains: A
Capsid protein VP1 protein, length: 273 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 6 15327
95 % 1 6 14680
90 % 1 6 14444
70 % 8 16 4806
50 % 11 29 833
40 % 87 167 233
30 % 94 206 211
Entity #2 | Chains: B
Capsid protein VP2 protein, length: 252 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 12534
95 % 1 7 12332
90 % 1 7 12200
70 % 11 31 758
50 % 87 204 202
40 % 87 204 214
30 % 92 217 215
Entity #3 | Chains: C
Capsid protein VP3 protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 6 13213
95 % 1 7 11980
90 % 1 7 11749
70 % 11 31 760
50 % 96 216 180
40 % 96 218 191
30 % 117 259 129
Entity #4 | Chains: D
Capsid protein VP4 protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 46630
95 % 3 8 9648
90 % 10 20 3817
70 % 29 79 764
50 % 72 141 431
40 % 72 141 452
30 % 72 141 473

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1D4M 4 4 PROTEIN (COXSACKIEVIRUS A9) VP4 138949
2 1H8T 4 D ECHOVIRUS 11 COAT PROTEIN VP4 138949
3 1OOP 4 D Coat protein VP4 138949
4 1MQT 4 D Polyprotein Capsid Protein SVDV COAT PROTEIN VP4 138949
5 4GB3 4 4 coat protein 4 UNP residues 2-69 138949
6 2X5I 4 D VP4 138949
7 1COV 4 4 COXSACKIEVIRUS COAT PROTEIN 138949
8 1EV1 4 4 ECHOVIRUS 1 VP1, VP2, VP3, VP4 138949
9 6RJF 4 4 VP4 138949
10 6ILL 4 D Capsid protein VP4 138949
11 6ILM 4 D Capsid protein VP4 138949
12 6ILN 4 D Capsid protein VP4 138949
13 6ILP 4 D Capsid protein VP4 138949
14 6ILJ 4 D Capsid protein VP4 138949
15 6ILK 4 D Capsid protein VP4 138949
16 6GZV 4 D Capsid protein VP4 138949 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
17 3JD7 4 4 Capsid protein VP4 UNP residues 2-69 138949
18 3IYP 4 D Polyprotein 138949
19 1UPN 4 D ECHOVIRUS 11 COAT PROTEIN VP4 STRUCTURE OF ECHOVIRUS TYPE 11 FITTED INTO CRYO-EM ELECTRON DENSITY FOR ECHOVIRUS TYPE 12. THE EM DENSITY HAS BEEN DEPOSITED IN THE EMDB, WITH ACCESSION CODE 1057 138949
20 1JEW 5 4 COXSACKIEVIRUS CAPSID, COAT PROTEIN VP4 Residues 2-69 138949