Sequence Similarity Clusters for the Entities in PDB 6ILL

Entity #1 | Chains: A
Capsid protein VP1 protein, length: 273 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 6 15131
95 % 1 6 15698
90 % 1 6 15469
70 % 8 16 5407
50 % 11 29 888
40 % 90 172 243
30 % 116 232 204
Entity #2 | Chains: B
Capsid protein VP2 protein, length: 252 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 13656
95 % 1 7 13308
90 % 1 7 13121
70 % 11 31 840
50 % 110 233 191
40 % 110 233 207
30 % 115 246 213
Entity #3 | Chains: C
Capsid protein VP3 protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 6 14255
95 % 1 7 12817
90 % 1 7 12638
70 % 11 31 839
50 % 117 243 174
40 % 119 247 182
30 % 140 289 127
Entity #4 | Chains: D
Capsid protein VP4 protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 39710
95 % 3 8 10338
90 % 10 20 4109
70 % 31 81 814
50 % 90 161 410
40 % 90 161 436
30 % 90 161 453

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1D4M 4 4 PROTEIN (COXSACKIEVIRUS A9) VP4 138949
2 1H8T 4 D ECHOVIRUS 11 COAT PROTEIN VP4 138949
3 1OOP 4 D Coat protein VP4 138949
4 1MQT 4 D Polyprotein Capsid Protein SVDV COAT PROTEIN VP4 138949
5 4GB3 4 4 coat protein 4 UNP residues 2-69 138949
6 2X5I 4 D VP4 138949
7 1COV 4 4 COXSACKIEVIRUS COAT PROTEIN 138949
8 1EV1 4 4 ECHOVIRUS 1 VP1, VP2, VP3, VP4 138949
9 6RJF 4 4 VP4 138949
10 6ILL 4 D Capsid protein VP4 138949
11 6ILM 4 D Capsid protein VP4 138949
12 6ILN 4 D Capsid protein VP4 138949
13 6ILP 4 D Capsid protein VP4 138949
14 6ILJ 4 D Capsid protein VP4 138949
15 6ILK 4 D Capsid protein VP4 138949
16 6GZV 4 D Capsid protein VP4 138949 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
17 3JD7 4 4 Capsid protein VP4 UNP residues 2-69 138949
18 3IYP 4 D Polyprotein 138949
19 1UPN 4 D ECHOVIRUS 11 COAT PROTEIN VP4 STRUCTURE OF ECHOVIRUS TYPE 11 FITTED INTO CRYO-EM ELECTRON DENSITY FOR ECHOVIRUS TYPE 12. THE EM DENSITY HAS BEEN DEPOSITED IN THE EMDB, WITH ACCESSION CODE 1057 138949
20 1JEW 5 4 COXSACKIEVIRUS CAPSID, COAT PROTEIN VP4 Residues 2-69 138949