Sequence Similarity Clusters for the Entities in PDB 6ILL

Entity #1 | Chains: A
Capsid protein VP1 protein, length: 273 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 6 15428
95 % 1 6 14847
90 % 1 6 14619
70 % 8 16 4967
50 % 11 29 846
40 % 72 168 237
30 % 72 170 243
Entity #2 | Chains: B
Capsid protein VP2 protein, length: 252 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 12930
95 % 1 7 12671
90 % 1 7 12480
70 % 11 31 791
50 % 91 213 198
40 % 91 213 216
30 % 96 226 214
Entity #3 | Chains: C
Capsid protein VP3 protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 6 16255
95 % 1 7 12879
90 % 1 7 12717
70 % 11 31 801
50 % 100 225 177
40 % 100 227 193
30 % 121 268 127
Entity #4 | Chains: D
Capsid protein VP4 protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 40111
95 % 3 8 9926
90 % 10 20 3961
70 % 42 96 633
50 % 76 148 421
40 % 76 148 444
30 % 76 148 463

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1D4M 4 4 PROTEIN (COXSACKIEVIRUS A9) VP4 138949
2 1H8T 4 D ECHOVIRUS 11 COAT PROTEIN VP4 138949
3 1OOP 4 D Coat protein VP4 138949
4 1MQT 4 D Polyprotein Capsid Protein SVDV COAT PROTEIN VP4 138949
5 4GB3 4 4 coat protein 4 UNP residues 2-69 138949
6 2X5I 4 D VP4 138949
7 1COV 4 4 COXSACKIEVIRUS COAT PROTEIN 138949
8 1EV1 4 4 ECHOVIRUS 1 VP1, VP2, VP3, VP4 138949
9 6RJF 4 4 VP4 138949
10 6ILL 4 D Capsid protein VP4 138949
11 6ILM 4 D Capsid protein VP4 138949
12 6ILN 4 D Capsid protein VP4 138949
13 6ILP 4 D Capsid protein VP4 138949
14 6ILJ 4 D Capsid protein VP4 138949
15 6ILK 4 D Capsid protein VP4 138949
16 6GZV 4 D Capsid protein VP4 138949 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
17 3JD7 4 4 Capsid protein VP4 UNP residues 2-69 138949
18 3IYP 4 D Polyprotein 138949
19 1UPN 4 D ECHOVIRUS 11 COAT PROTEIN VP4 STRUCTURE OF ECHOVIRUS TYPE 11 FITTED INTO CRYO-EM ELECTRON DENSITY FOR ECHOVIRUS TYPE 12. THE EM DENSITY HAS BEEN DEPOSITED IN THE EMDB, WITH ACCESSION CODE 1057 138949
20 1JEW 5 4 COXSACKIEVIRUS CAPSID, COAT PROTEIN VP4 Residues 2-69 138949