Sequence Similarity Clusters for the Entities in PDB 6ILL

Entity #1 | Chains: A
Capsid protein VP1 protein, length: 273 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 6 16776
95 % 1 6 15081
90 % 1 6 14834
70 % 8 16 5244
50 % 11 29 870
40 % 80 162 260
30 % 106 222 205
Entity #2 | Chains: B
Capsid protein VP2 protein, length: 252 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 13387
95 % 1 7 12953
90 % 1 7 12760
70 % 11 31 824
50 % 99 222 196
40 % 99 222 207
30 % 104 235 213
Entity #3 | Chains: C
Capsid protein VP3 protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 6 14811
95 % 1 7 13021
90 % 1 7 12827
70 % 11 31 818
50 % 108 234 179
40 % 108 236 188
30 % 129 278 127
Entity #4 | Chains: D
Capsid protein VP4 protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 48994
95 % 3 8 10152
90 % 10 20 4021
70 % 42 96 653
50 % 83 154 417
40 % 83 154 435
30 % 83 154 454

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1D4M 4 4 PROTEIN (COXSACKIEVIRUS A9) VP4 138949
2 1H8T 4 D ECHOVIRUS 11 COAT PROTEIN VP4 138949
3 1OOP 4 D Coat protein VP4 138949
4 1MQT 4 D Polyprotein Capsid Protein SVDV COAT PROTEIN VP4 138949
5 4GB3 4 4 coat protein 4 UNP residues 2-69 138949
6 2X5I 4 D VP4 138949
7 1COV 4 4 COXSACKIEVIRUS COAT PROTEIN 138949
8 1EV1 4 4 ECHOVIRUS 1 VP1, VP2, VP3, VP4 138949
9 6RJF 4 4 VP4 138949
10 6ILL 4 D Capsid protein VP4 138949
11 6ILM 4 D Capsid protein VP4 138949
12 6ILN 4 D Capsid protein VP4 138949
13 6ILP 4 D Capsid protein VP4 138949
14 6ILJ 4 D Capsid protein VP4 138949
15 6ILK 4 D Capsid protein VP4 138949
16 6GZV 4 D Capsid protein VP4 138949 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
17 3JD7 4 4 Capsid protein VP4 UNP residues 2-69 138949
18 3IYP 4 D Polyprotein 138949
19 1UPN 4 D ECHOVIRUS 11 COAT PROTEIN VP4 STRUCTURE OF ECHOVIRUS TYPE 11 FITTED INTO CRYO-EM ELECTRON DENSITY FOR ECHOVIRUS TYPE 12. THE EM DENSITY HAS BEEN DEPOSITED IN THE EMDB, WITH ACCESSION CODE 1057 138949
20 1JEW 5 4 COXSACKIEVIRUS CAPSID, COAT PROTEIN VP4 Residues 2-69 138949