6ILL

Cryo-EM structure of Echovirus 6 complexed with its uncoating receptor FcRn at PH 5.5


Sequence Similarity Clusters for the Entities in PDB 6ILL

Entity #1 | Chains: A
Capsid protein VP1 protein, length: 273 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 6 16059
95 % 1 6 16678
90 % 1 6 16074
70 % 12 17 5288
50 % 22 40 837
40 % 144 260 191
30 % 146 264 196
Entity #2 | Chains: B
Capsid protein VP2 protein, length: 252 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 14477
95 % 1 7 13640
90 % 1 7 13993
70 % 20 40 813
50 % 136 259 202
40 % 136 259 209
30 % 141 272 211
Entity #3 | Chains: C
Capsid protein VP3 protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 6 16330
95 % 1 7 14203
90 % 1 7 13992
70 % 22 42 787
50 % 136 253 242
40 % 147 275 182
30 % 147 275 189
Entity #4 | Chains: D
Capsid protein VP4 protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 57286
95 % 3 8 10982
90 % 18 28 2929
70 % 51 104 666
50 % 106 177 400
40 % 106 177 422
30 % 106 177 438

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

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ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1D4M 4 4 PROTEIN (COXSACKIEVIRUS A9) VP4 138949
2 1H8T 4 D ECHOVIRUS 11 COAT PROTEIN VP4 138949
3 1OOP 4 D Coat protein VP4 138949
4 1MQT 4 D Polyprotein Capsid Protein SVDV COAT PROTEIN VP4 138949
5 4GB3 4 4 coat protein 4 UNP residues 2-69 138949
6 2X5I 4 D VP4 138949
7 1COV 4 4 COXSACKIEVIRUS COAT PROTEIN 138949
8 1EV1 4 4 ECHOVIRUS 1 VP1, VP2, VP3, VP4 138949
9 7C9X 4 D VP4 138949
10 7C9Y 4 D VP4 138949
11 7C9Z 4 D VP4 138949
12 7C9S 4 D VP4 138949
13 7C9V 4 D VP4 138949
14 7C9W 4 D VP4 138949
15 7C80 6 D VP4 138949
16 7C81 4 D VP4 138949
17 6RJF 4 4 VP4 138949
18 6ILL 4 D Capsid protein VP4 138949
19 6ILM 4 D Capsid protein VP4 138949
20 6ILN 4 D Capsid protein VP4 138949
21 6ILP 4 D Capsid protein VP4 138949
22 6ILJ 4 D Capsid protein VP4 138949
23 6ILK 4 D Capsid protein VP4 138949
24 6GZV 4 D Capsid protein VP4 138949 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
25 3JD7 4 4 Capsid protein VP4 UNP residues 2-69 138949
26 3IYP 4 D Polyprotein 138949
27 1UPN 4 D ECHOVIRUS 11 COAT PROTEIN VP4 STRUCTURE OF ECHOVIRUS TYPE 11 FITTED INTO CRYO-EM ELECTRON DENSITY FOR ECHOVIRUS TYPE 12. THE EM DENSITY HAS BEEN DEPOSITED IN THE EMDB, WITH ACCESSION CODE 1057 138949
28 1JEW 5 4 COXSACKIEVIRUS CAPSID, COAT PROTEIN VP4 Residues 2-69 138949