Sequence Similarity Clusters for the Entities in PDB 6ILO

Entity #1 | Chains: A
Capsid protein VP1 protein, length: 227 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 75259
95 % 1 1 53573
90 % 1 1 50695
70 % 1 1 44245
50 % 1 2 30680
40 % 1 9 7731
30 % 3 15 4848
Entity #2 | Chains: B
Capsid protein VP2 protein, length: 249 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 7 12551
95 % 4 7 12399
90 % 4 7 12249
70 % 14 31 761
50 % 90 204 200
40 % 90 204 212
30 % 95 217 215
Entity #3 | Chains: C
Capsid protein VP3 protein, length: 234 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 75258
95 % 4 7 12458
90 % 4 7 12311
70 % 14 31 765
50 % 99 216 179
40 % 99 218 191
30 % 120 259 126

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 6ILO 1 A Capsid protein VP1 138949