Sequence Similarity Clusters for the Entities in PDB 6ILO

Entity #1 | Chains: A
Capsid protein VP1 protein, length: 227 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 84817
95 % 1 1 56489
90 % 1 1 53357
70 % 1 1 46426
50 % 1 2 32244
40 % 1 9 8685
30 % 3 15 5091
Entity #2 | Chains: B
Capsid protein VP2 protein, length: 249 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 7 13629
95 % 4 7 13247
90 % 4 7 13063
70 % 14 31 838
50 % 113 233 193
40 % 113 233 209
30 % 118 246 212
Entity #3 | Chains: C
Capsid protein VP3 protein, length: 234 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 88256
95 % 4 7 13650
90 % 4 7 12951
70 % 14 31 834
50 % 120 243 176
40 % 122 247 180
30 % 122 247 190

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3VBR 1 A Genome Polyprotein, capsid protein VP1 138948
2 3VBU 1 A Genome Polyprotein, capsid protein VP1 138948
3 6ILO 1 A Capsid protein VP1 138949
4 5KWL 1 1 VP1 UNP residues 650-858 138950
5 5KTZ 1 1 VP1 UNP residues 636-858 138950
6 5KU0 1 1 VP1 UNP reisdues 636-858 138950
7 5KU2 1 1 VP1 UNP residues 650-858 138950
8 4BIP 1 A VP1 138948
9 4BIQ 1 A VP1 HOMOLOGY MODEL OF COXSACKIEVIRUS A7 EMPTY CAPSID PROTEIN VP1 138948
10 3J2J 1 A Protein VP1 UNP residues 631-852 138949
11 3J22 1 A capsid protein VP1 UNP residues 638-862 138948
12 3J23 1 A capsid protein VP1 UNP residues 638-862 138948
13 3IYB 1 1 Genome polyprotein 138950 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
14 3IYC 1 1 Genome polyprotein 138950 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
15 1XYR 1 1 Genome polyprotein, Coat protein VP1 residues 649-880 138950