Sequence Similarity Clusters for the Entities in PDB 6ILO

Entity #1 | Chains: A
Capsid protein VP1 protein, length: 227 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 83629
95 % 1 1 55577
90 % 1 1 52529
70 % 1 1 48904
50 % 1 2 31836
40 % 1 9 8053
30 % 3 15 4989
Entity #2 | Chains: B
Capsid protein VP2 protein, length: 249 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 7 13387
95 % 4 7 12953
90 % 4 7 12760
70 % 14 31 824
50 % 102 222 196
40 % 102 222 207
30 % 107 235 213
Entity #3 | Chains: C
Capsid protein VP3 protein, length: 234 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 83628
95 % 4 7 13021
90 % 4 7 12827
70 % 14 31 818
50 % 111 234 179
40 % 111 236 188
30 % 132 278 127

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3VBR 1 A Genome Polyprotein, capsid protein VP1 138948
2 3VBU 1 A Genome Polyprotein, capsid protein VP1 138948
3 6ILO 1 A Capsid protein VP1 138949
4 5KWL 1 1 VP1 UNP residues 650-858 138950
5 5KTZ 1 1 VP1 UNP residues 636-858 138950
6 5KU0 1 1 VP1 UNP reisdues 636-858 138950
7 5KU2 1 1 VP1 UNP residues 650-858 138950
8 4BIP 1 A VP1 138948
9 4BIQ 1 A VP1 HOMOLOGY MODEL OF COXSACKIEVIRUS A7 EMPTY CAPSID PROTEIN VP1 138948
10 3J2J 1 A Protein VP1 UNP residues 631-852 138949
11 3J22 1 A capsid protein VP1 UNP residues 638-862 138948
12 3J23 1 A capsid protein VP1 UNP residues 638-862 138948
13 3IYB 1 1 Genome polyprotein 138950 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
14 3IYC 1 1 Genome polyprotein 138950 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
15 1XYR 1 1 Genome polyprotein, Coat protein VP1 residues 649-880 138950