Sequence Similarity Clusters for the Entities in PDB 6ILO

Entity #1 | Chains: A
Capsid protein VP1 protein, length: 227 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 75344
95 % 1 1 53622
90 % 1 1 54281
70 % 1 1 39217
50 % 1 2 26657
40 % 1 9 8219
30 % 3 15 4741
Entity #2 | Chains: B
Capsid protein VP2 protein, length: 249 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 7 12534
95 % 4 7 12332
90 % 4 7 12200
70 % 14 31 758
50 % 90 204 202
40 % 90 204 214
30 % 95 217 215
Entity #3 | Chains: C
Capsid protein VP3 protein, length: 234 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 81984
95 % 4 7 11980
90 % 4 7 11749
70 % 14 31 760
50 % 99 216 180
40 % 99 218 191
30 % 120 259 129

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 6ILO 1 A Capsid protein VP1 138949
2 5KWL 1 1 VP1 UNP residues 650-858 138950
3 5KTZ 1 1 VP1 UNP residues 636-858 138950
4 5KU0 1 1 VP1 UNP reisdues 636-858 138950
5 5KU2 1 1 VP1 UNP residues 650-858 138950
6 3J2J 1 A Protein VP1 UNP residues 631-852 138949
7 3IYB 1 1 Genome polyprotein 138950 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
8 3IYC 1 1 Genome polyprotein 138950 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
9 1XYR 1 1 Genome polyprotein, Coat protein VP1 residues 649-880 138950