6ILO

Cryo-EM structure of empty Echovirus 6 particle at PH 7.4


Sequence Similarity Clusters for the Entities in PDB 6ILO

Entity #1 | Chains: A
Capsid protein VP1 protein, length: 227 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 88191
95 % 1 1 62936
90 % 1 1 55289
70 % 1 1 51273
50 % 1 2 33346
40 % 1 9 8642
30 % 3 15 5428
Entity #2 | Chains: B
Capsid protein VP2 protein, length: 249 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 7 14463
95 % 4 7 13935
90 % 4 7 13732
70 % 23 40 804
50 % 139 259 201
40 % 139 259 208
30 % 144 272 212
Entity #3 | Chains: C
Capsid protein VP3 protein, length: 234 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 91759
95 % 4 7 14449
90 % 4 7 13731
70 % 25 42 778
50 % 148 271 175
40 % 150 275 182
30 % 150 275 190

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 6ILO 1 A Capsid protein VP1 138949
2 5KWL 1 1 VP1 UNP residues 650-858 138950
3 5KTZ 1 1 VP1 UNP residues 636-858 138950
4 5KU0 1 1 VP1 UNP reisdues 636-858 138950
5 5KU2 1 1 VP1 UNP residues 650-858 138950
6 3J2J 1 A Protein VP1 UNP residues 631-852 138949
7 3IYB 1 1 Genome polyprotein 138950 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
8 3IYC 1 1 Genome polyprotein 138950 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
9 1XYR 1 1 Genome polyprotein, Coat protein VP1 residues 649-880 138950