Sequence Similarity Clusters for the Entities in PDB 6ILO

Entity #1 | Chains: A
Capsid protein VP1 protein, length: 227 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 76854
95 % 1 1 54506
90 % 1 1 51521
70 % 1 1 48045
50 % 1 2 31277
40 % 1 9 8379
30 % 3 15 4911
Entity #2 | Chains: B
Capsid protein VP2 protein, length: 249 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 7 12930
95 % 4 7 12671
90 % 4 7 12480
70 % 14 31 791
50 % 94 213 198
40 % 94 213 216
30 % 99 226 214
Entity #3 | Chains: C
Capsid protein VP3 protein, length: 234 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 83552
95 % 4 7 12879
90 % 4 7 12717
70 % 14 31 801
50 % 103 225 177
40 % 103 227 193
30 % 124 268 127

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 6ILO 1 A Capsid protein VP1 138949
2 5KWL 1 1 VP1 UNP residues 650-858 138950
3 5KTZ 1 1 VP1 UNP residues 636-858 138950
4 5KU0 1 1 VP1 UNP reisdues 636-858 138950
5 5KU2 1 1 VP1 UNP residues 650-858 138950
6 3J2J 1 A Protein VP1 UNP residues 631-852 138949
7 3IYB 1 1 Genome polyprotein 138950 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
8 3IYC 1 1 Genome polyprotein 138950 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
9 1XYR 1 1 Genome polyprotein, Coat protein VP1 residues 649-880 138950