6ILO

Cryo-EM structure of empty Echovirus 6 particle at PH 7.4


Sequence Similarity Clusters for the Entities in PDB 6ILO

Entity #1 | Chains: A
Capsid protein VP1 protein, length: 227 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 86621
95 % 1 1 61734
90 % 1 1 54370
70 % 1 1 41868
50 % 1 2 28045
40 % 1 9 8372
30 % 3 15 5102
Entity #2 | Chains: B
Capsid protein VP2 protein, length: 249 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 7 13955
95 % 4 7 13479
90 % 4 7 13270
70 % 14 31 868
50 % 115 235 199
40 % 115 235 213
30 % 120 248 215
Entity #3 | Chains: C
Capsid protein VP3 protein, length: 234 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 90110
95 % 4 7 13442
90 % 4 7 13226
70 % 14 31 865
50 % 122 245 177
40 % 124 249 186
30 % 145 291 131

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 6ILO 1 A Capsid protein VP1 138949
2 3J2J 1 A Protein VP1 UNP residues 631-852 138949