6ILO

Cryo-EM structure of empty Echovirus 6 particle at PH 7.4


Sequence Similarity Clusters for the Entities in PDB 6ILO

Entity #1 | Chains: A
Capsid protein VP1 protein, length: 227 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 85989
95 % 1 1 61357
90 % 1 1 58849
70 % 1 1 47017
50 % 1 2 32637
40 % 1 9 8282
30 % 3 15 5151
Entity #2 | Chains: B
Capsid protein VP2 protein, length: 249 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 7 13854
95 % 4 7 13321
90 % 4 7 13140
70 % 14 31 857
50 % 113 233 193
40 % 113 233 208
30 % 118 246 214
Entity #3 | Chains: C
Capsid protein VP3 protein, length: 234 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 89442
95 % 4 7 13579
90 % 4 7 13395
70 % 14 31 854
50 % 120 243 175
40 % 122 247 185
30 % 143 289 128

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 6ILO 1 A Capsid protein VP1 138949