Sequence Similarity Clusters for the Entities in PDB 6ILO

Entity #1 | Chains: A
Capsid protein VP1 protein, length: 227 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 82959
95 % 1 1 55191
90 % 1 1 52111
70 % 1 1 45501
50 % 1 2 26991
40 % 1 9 8475
30 % 3 15 4962
Entity #2 | Chains: B
Capsid protein VP2 protein, length: 249 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 7 13256
95 % 4 7 12444
90 % 4 7 12277
70 % 14 31 808
50 % 94 213 200
40 % 94 213 212
30 % 99 226 216
Entity #3 | Chains: C
Capsid protein VP3 protein, length: 234 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 82958
95 % 4 7 12864
90 % 4 7 12697
70 % 14 31 814
50 % 11 23 944
40 % 103 227 190
30 % 124 268 127

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 6ILO 1 A Capsid protein VP1 138949