Sequence Similarity Clusters for the Entities in PDB 6ILO

Entity #1 | Chains: A
Capsid protein VP1 protein, length: 227 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 75344
95 % 1 1 53622
90 % 1 1 54281
70 % 1 1 39217
50 % 1 2 26657
40 % 1 9 8219
30 % 3 15 4741
Entity #2 | Chains: B
Capsid protein VP2 protein, length: 249 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 7 12534
95 % 4 7 12332
90 % 4 7 12200
70 % 14 31 758
50 % 90 204 202
40 % 90 204 214
30 % 95 217 215
Entity #3 | Chains: C
Capsid protein VP3 protein, length: 234 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 81984
95 % 4 7 11980
90 % 4 7 11749
70 % 14 31 760
50 % 99 216 180
40 % 99 218 191
30 % 120 259 129

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4Q4W 2 2 Coxsackievirus capsid protein VP2 138950
2 4Q4X 2 2 Coxsackievirus capsid protein VP2 138950
3 4Q4Y 2 2 Coxsackievirus capsid protein VP2 138950
4 1AYM 2 2 HUMAN RHINOVIRUS 16 COAT PROTEIN 169066
5 4WM8 2 B VP2 138951
6 5BNP 2 B Capsid protein VP2 UNP residues 70-317 138951
7 3VBH 2 B Genome polyprotein, capsid protein VP2 138948
8 1PVC 3 2 POLIOVIRUS TYPE 3, SABIN STRAIN P3/SABIN P3/LEON/12A(1)B 138950
9 5BNO 2 B Capsid protein VP2 UNP residues 70-317 138951
10 1FPN 2 2 COAT PROTEIN VP2 147711
11 1ND2 2 B coat protein VP2 147711
12 4WM7 2 B VP2 138951
13 1HXS 2 2 GENOME POLYPROTEIN, COAT PROTEIN VP2 RESIDUES 69-340 138950
14 5BNN 2 B Capsid protein VP2 UNP residues 70-317 138951
15 5CFD 3 C VP2 1821750
16 1NCQ 2 B COAT PROTEIN VP2 147712
17 5CFC 3 C VP2 residues 154-411 1821750
18 3CJI 3 C Polyprotein sequence database residues 435-673 390157
19 1D4M 2 2 PROTEIN (COXSACKIEVIRUS A9) VP2 138949
20 4RHV 2 2 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP2) 147712
21 1EAH 2 2 POLIOVIRUS TYPE 2 COAT PROTEINS VP1 TO VP4 138950
22 4Q4V 2 2 Coxsackievirus capsid protein VP2 138950
23 1K5M 2 B CHIMERA OF HRV14 COAT PROTEIN VP2 (P1B) AND the V3 loop of HIV-1 gp120 THE CHIMERA CONSISTS OF THE HRV14 COAT PROTEIN VP2 (P1B) AND RESIDUES 314-325 OF HIV-1 gp120. 147712
24 1QJU 2 2 PROTEIN VP2 RESIDUES 70-330 147711
25 3VBF 2 B Genome Polyprotein, capsid protein VP2 STRAIN FUYANG, ANHUI. P.R.C/17.08/1 138948
26 2PLV 2 2 HUMAN POLIOVIRUS TYPE 1 (SUBUNIT VP2) 138950
27 4PDW 2 B Genome polyprotein resdiues 70-331 147712 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
28 4CDQ 2 B VP2 138948
29 3ZFE 2 B VP2 VIRION OF HUMAN ENTEROVIRUS 71 138948
30 1QJX 2 2 PROTEIN VP2 RESIDUES 70-330 147711
31 1QJY 2 2 PROTEIN VP2 RESIDUES 70-330 147711
32 1NCR 2 B coat protein VP2 147711
33 3VBO 2 B Genome Polyprotein, capsid protein VP2 138948
34 1AYN 2 2 HUMAN RHINOVIRUS 16 COAT PROTEIN 169066
35 1C8M 2 2 HUMAN RHINOVIRUS 16 COAT PROTEIN RESIDUES 79-330 147711
36 2MEV 2 2 MENGO VIRUS COAT PROTEIN (SUBUNIT VP2) 1821749
37 1AR7 3 2 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
38 1ND3 2 B coat protein VP2 147711
39 1BEV 2 2 BOVINE ENTEROVIRUS COAT PROTEINS VP1 TO VP4 12064
40 4JGY 2 B Polyprotein, capsid protein VP2 STRAIN NINGBO.CHN/028-2/2009 138948
41 1AL2 3 2 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
42 1PO1 3 2 POLIOVIRUS TYPE 1 MAHONEY 138950
43 1AR9 3 2 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
44 5C4W 2 B VP2 138948
45 1H8T 2 B ECHOVIRUS 11 COAT PROTEIN VP2 138949
46 1PO2 3 2 POLIOVIRUS TYPE 1 MAHONEY 138950
47 1ASJ 3 2 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
48 1Z7S 2 2 Human COXSACKIEVIRUS A21 Viral Protein 2 138950
49 1OOP 2 B Coat protein VP2 138949
50 4CDX 2 B VP2 138948
51 3VDD 2 B Protein VP2 UNP residues 70-330 147711
52 1NA1 2 B Coat protein VP2 147712
53 4CDU 2 B VP2 138948
54 1VBB 3 2 POLIOVIRUS TYPE 3 138950
55 1AR6 3 2 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
56 1AR8 3 2 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
57 4N53 2 B Capsid protein VP2 138948
58 4CDW 2 B VP2 138948
59 4CEY 2 B VP2 138948
60 1VBC 3 2 POLIOVIRUS TYPE 3 138950
61 3TN9 2 2 Protein VP2 147711
62 3ZFG 2 B VP2 VIRION OF HUMAN ENTEROVIRUS 71 138948
63 1VBE 3 2 POLIOVIRUS TYPE 3 138950
64 4CEW 2 B VP2 138948
65 3VBS 2 B Genome Polyprotein, capsid protein VP2 138948
66 5ABJ 2 B VP2 UNP RESIDUES 70-323 138948
67 1VBD 3 2 POLIOVIRUS TYPE 1 MAHONEY P1/MAHONEY 138950
68 1TME 2 2 THEILER'S MURINE ENCEPHALOMYELITIS VIRUS (SUBUNIT VP2) 1821750
69 3ZFF 2 B VP2 138948
70 1RHI 2 2 HUMAN RHINOVIRUS 3 COAT PROTEIN 147712
71 1VBA 3 2 POLIOVIRUS TYPE 3 138950
72 4JGZ 2 B Polyprotein, capsid protein VP2 STRAIN NINGBO.CHN/028-2/2009 138948
73 1MQT 2 B Polyprotein Capsid Protein SVDV COAT PROTEIN VP2 138949
74 1RVF 2 2 HUMAN RHINOVIRUS 14 COAT PROTEIN 147712
75 4GB3 2 2 coat protein 2 UNP residues 70-332 138949
76 2X5I 2 B VP2 138949
77 1PIV 3 2 POLIOVIRUS TYPE 3 (SUBUNIT VP2) 138950
78 1COV 2 2 COXSACKIEVIRUS COAT PROTEIN 138949
79 1R1A 2 2 HUMAN RHINOVIRUS 1A COAT PROTEIN (SUBUNIT VP2) 147711
80 1EV1 2 2 ECHOVIRUS 1 VP1, VP2, VP3, VP4 138949
81 4N43 2 B Capsid protein VP2 EV71 capsid protein VP2 138948
82 3VBR 2 B Genome Polyprotein, capsid protein VP0 138948
83 1V9U 2 2 Coat protein VP2 147711
84 4AED 2 B VP2 138948
85 3VBU 2 B Genome Polyprotein, capsid protein VP0 138948
86 3DPR 2 B Protein VP2 147711
87 4L3B 2 B Protein VP2 UNP residues 70-330 147711
88 6RJF 2 2 VP2 138949
89 6O06 2 B VP2 UNP residues 77-330 138949
90 6MZI 3 C viral protein 2 UNP residues 70-317 138951
91 6I2K 2 B Polyprotein 138948
92 6ILL 2 B Capsid protein VP2 138949
93 6ILM 2 B Capsid protein VP2 138949
94 6ILN 2 B Capsid protein VP2 138949
95 6ILO 2 B Capsid protein VP2 138949
96 6ILP 2 B Capsid protein VP2 138949
97 6ILJ 2 B Capsid protein VP2 138949
98 6ILK 2 B Capsid protein VP2 138949
99 6IIJ 2 B VP2 138948
100 6AKS 2 B VP2 138948
101 6AKT 2 B VP2 138948
102 6AKU 2 B VP2 138948
103 6HHT 2 B1, B2, E1, E2, H1, H2, K1, K2, N1, N2, Q1, Q2, T1, T2, W1, W2, Z2, c2, f2, i2, l2, o2, r2, u2, x2 Echovirus 18 capsid protein 2 138949
104 6AJ7 4 B Capsid protein VP2 138951
105 6AJ9 6 B Capsid protein VP2 138951
106 6AJ2 2 B Capsid protein VP2 138951
107 6AJ3 2 B Capsid protein VP2 138951
108 6AJ0 2 B Virion protein 2 138951
109 6HBG 2 B Echovirus 18 viral protein 2 138949 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
110 6HBH 2 B Echovirus 18 capsid protein 2 138949
111 6HBJ 2 B Viral protein 2 138949 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
112 6HBK 3 B, E, H, K, N, Q, T, W, Z, c, f Echovirus 18 capsid protein 3 138949
113 6HBL 2 B, E, H, K, N, Q, T, W, Z, c, f, i, l, o, r Echovirus 18 capsid protein 2 138949
114 6ADR 3 B vp2 390157
115 6ADS 3 B VP2 390157
116 6ADT 3 B VP2 390157
117 6ADM 3 B VP2 390157
118 6ACY 2 B VP2 138948
119 6ACZ 2 B VP2 138948
120 6AD0 4 B VP2 138948
121 6ACU 2 B VP2 138948
122 6GZV 2 B Capsid protein VP2 138949 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
123 6DIZ 2 B VP2 138948
124 6DIJ 2 B VP2 138948
125 6CX1 3 C Capsid protein VP2 residues 162-429 390157
126 6CSA 3 C viral protein 2 UNP residues 70-317 138951
127 6CSG 3 C viral protein 2 UNP residues 70-317 138951
128 6CSH 3 C viral protein 2 UNP residues 70-317 138951
129 6CRP 3 C viral protein 2 UNP residues 70-317 138951
130 6CRR 3 C viral protein 2 UNP residues 70-317 138951
131 6CRS 3 C viral protein 2 UNP residues 70-317 138951
132 6CRU 3 C viral protein 2 UNP residues 70-317 138951
133 6CS3 3 C viral protein 2 UNP residues 70-317 138951
134 6CS4 3 C viral protein 2 UNP residues 70-317 138951
135 6CS5 3 C viral protein 2 UNP residues 70-317 138951
136 6CS6 3 C viral protein 2 UNP residues 70-317 138951
137 6EIT 2 2 VP2 138950
138 5OSN 2 B Capsid protein 12064
139 5XS4 2 B Genome polyprotein UNP residues 7-=325 138948
140 5XS7 4 B Genome polyprotein UNP residues 70-325 138948
141 5W3L 3 C viral protein 2 UNP residues 70-331 147712
142 5W3M 5 C viral protein 2 UNP residues 70-331 147712
143 5W3O 5 C viral protein 2 UNP residues 70-331 147712
144 5W3E 5 C viral protein 2 UNP residues 70-331 147712
145 5O5P 2 2 Capsid proteins, VP2 138950
146 5O5B 2 2 Capsid proteins 138950
147 5KWL 2 2 VP2 UNP residues 70-337 138950
148 5KTZ 2 2 VP2 UNP residues 70-338 138950
149 5KU0 2 2 VP2 UNP residues 70-338 138950
150 5KU2 2 2 VP2 UNP residues 70-337 138950
151 5K0U 3 C Capsid protein VP2 UNP residues 68-332 463676
152 3JD7 2 2 Capsid protein VP2 UNP residues 70-332 138949
153 3JBC 2 2 Capsid protein VP2 UNP residues 70-341 138950
154 3JBD 2 2 Capsid protein VP2 UNP residues 70-341 138950
155 3JBE 2 2 Capsid protein VP2 UNP residues 70-341 138950
156 3JBF 2 2 Capsid protein VP2 UNP residues 70-341 138950
157 3JBG 2 2 Capsid protein VP2 UNP residues 70-341 138950
158 5A8F 3 C HUMAN SAFFOLD VIRUS-3 VP2 1821750
159 3J9F 2 2 Protein VP2 UNP residues 70-341 138950
160 3J8F 2 2 Capsid protein VP2 UNP residues 70-341 138950
161 4C0U 2 B VP2 138948
162 4C0Y 2 B VP2 138948
163 4C10 4 B VP3 138948
164 3J48 2 2 Protein VP2 UNP residues 70-341 138950
165 4BIP 2 B VP2 138948
166 4BIQ 2 B VP2 HOMOLOGY MODEL OF COXSACKIEVIRUS A7 EMPTY CAPSID PROTEIN VP2 138948
167 3J3O 5 2 Protein VP2 UNP residues 70-341 138950
168 3J3P 4 2 Protein VP2 UNP residues 70-341 138950
169 3J2J 3 C Protein VP2 UNP residues 79-330 138949
170 3J22 2 B capsid protein VP0 UNP residues 82-318 138948
171 3J23 2 B capsid protein VP0 UNP residues 82-318 138948
172 3IYP 3 C Polyprotein 138949
173 3IYB 4 4 Genome polyprotein 138950 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
174 3IYC 4 4 Genome polyprotein 138950 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
175 3EPC 3 2 Protein VP2 138950
176 3EPD 4 2 protein VP2 138950
177 3EPF 3 2 Protein VP2 138950
178 2C8I 2 B ECHOVIRUS 11 COAT PROTEIN VP2 138949
179 1Z7Z 2 2 human coxsackievirus A21 Viral Protein 2 residues 2010-2272 138950
180 1XYR 2 2 Genome polyprotein, Coat protein VP2 residues 96-332 138950
181 1UPN 2 B ECHOVIRUS 11 COAT PROTEIN VP2 138949
182 1NN8 3 2 coat protein VP2 138950
183 1M11 3 2 COAT PROTEIN VP2 138949
184 1JEW 3 2 COXSACKIEVIRUS CAPSID, COAT PROTEIN VP2 Residues 70-332 138949
185 1DGI 3 2 VP2 138950
186 1D3E 3 2 PROTEIN (RHINOVIRUS 16 COAT PROTEIN VP2) 169066
187 1D3I 3 2 PROTEIN (RHINOVIRUS 14 COAT PROTEIN VP2) 169066
188 1VRH 2 2 RHINOVIRUS 14 147712
189 1RUC 2 2 RHINOVIRUS 14 147712
190 1RUD 2 2 RHINOVIRUS 14 147712
191 1RUE 2 2 RHINOVIRUS 14 147712
192 1RUF 2 2 RHINOVIRUS 14 147712
193 1RUG 2 2 RHINOVIRUS 14 147712
194 1RUH 2 2 RHINOVIRUS 14 147712
195 1RUI 2 2 RHINOVIRUS 14 147712
196 1RUJ 2 2 RHINOVIRUS 14 147712
197 1HRV 2 2 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP2) 147712
198 2HWB 2 2 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP2) 147712
199 2HWC 2 2 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP2) 147712
200 2HWD 2 2 HUMAN RHINOVIRUS 1A COAT PROTEIN (SUBUNIT VP2) 147711
201 2HWE 2 2 HUMAN RHINOVIRUS 1A COAT PROTEIN (SUBUNIT VP2) 147711
202 2HWF 2 2 HUMAN RHINOVIRUS 1A COAT PROTEIN (SUBUNIT VP2) 147711
203 1HRI 2 2 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP2) 147712
204 1TMF 2 2 THEILER'S MURINE ENCEPHALOMYELITIS VIRUS (SUBUNIT VP2) 1821750
205 1MEC 2 2 MENGO VIRUS COAT PROTEIN (SUBUNIT VP2) 1821749
206 1R09 2 2 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP2) 147712
207 1R08 2 2 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP2) 147712
208 1RMU 2 2 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP2) 147712
209 2R04 2 2 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP2) 147712
210 2R06 2 2 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP2) 147712
211 2R07 2 2 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP2) 147712
212 2RM2 2 2 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP2) 147712
213 2RMU 2 2 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP2) 147712
214 2RR1 2 2 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP2) 147712
215 2RS1 2 2 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP2) 169066
216 2RS3 2 2 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP2) 147712
217 2RS5 2 2 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP2) 147712