Sequence Similarity Clusters for the Entities in PDB 6ILO

Entity #1 | Chains: A
Capsid protein VP1 protein, length: 227 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 83776
95 % 1 1 55760
90 % 1 1 52603
70 % 1 1 45894
50 % 1 2 31873
40 % 1 9 8087
30 % 3 15 5078
Entity #2 | Chains: B
Capsid protein VP2 protein, length: 249 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 7 13367
95 % 4 7 12917
90 % 4 7 12738
70 % 14 31 825
50 % 102 222 197
40 % 102 222 209
30 % 107 235 214
Entity #3 | Chains: C
Capsid protein VP3 protein, length: 234 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 83775
95 % 4 7 13022
90 % 4 7 12769
70 % 14 31 824
50 % 11 23 953
40 % 111 236 189
30 % 132 278 128

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 6ILL 2 B Capsid protein VP2 138949
2 6ILM 2 B Capsid protein VP2 138949
3 6ILN 2 B Capsid protein VP2 138949
4 6ILO 2 B Capsid protein VP2 138949
5 6ILP 2 B Capsid protein VP2 138949
6 6ILJ 2 B Capsid protein VP2 138949
7 6ILK 2 B Capsid protein VP2 138949