6ILO

Cryo-EM structure of empty Echovirus 6 particle at PH 7.4


Sequence Similarity Clusters for the Entities in PDB 6ILO

Entity #1 | Chains: A
Capsid protein VP1 protein, length: 227 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 86621
95 % 1 1 61734
90 % 1 1 54370
70 % 1 1 41868
50 % 1 2 28045
40 % 1 9 8372
30 % 3 15 5102
Entity #2 | Chains: B
Capsid protein VP2 protein, length: 249 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 7 13955
95 % 4 7 13479
90 % 4 7 13270
70 % 14 31 868
50 % 115 235 199
40 % 115 235 213
30 % 120 248 215
Entity #3 | Chains: C
Capsid protein VP3 protein, length: 234 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 90110
95 % 4 7 13442
90 % 4 7 13226
70 % 14 31 865
50 % 122 245 177
40 % 124 249 186
30 % 145 291 131

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

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Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4Q4W 3 3 Coxsackievirus capsid protein VP3 138950
2 4Q4X 3 3 Coxsackievirus capsid protein VP3 138950
3 4Q4Y 3 3 Coxsackievirus capsid protein VP3 138950
4 6T4C 3 C VP3 1330520 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
5 6T48 3 C VP3 1330520 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
6 5C8C 3 C VP3 138948
7 1AYM 3 3 HUMAN RHINOVIRUS 16 COAT PROTEIN 169066
8 4WM8 3 C VP3 138951
9 5BNP 3 C Capsid protein VP3 UNP residues 318-564 138951
10 3VBH 3 C Genome Polyprotein, vapsid protein VP3 138948
11 1PVC 4 3 POLIOVIRUS TYPE 3, SABIN STRAIN P3/SABIN P3/LEON/12A(1)B 138950
12 5BNO 3 C Capsid protein VP3 UNP residues 318-564 138951
13 1FPN 3 3 COAT PROTEIN VP3 147711
14 5OSN 3 C Capsid protein 12064
15 1ND2 3 C coat protein VP3 147711
16 4WM7 3 C VP3 138951
17 1HXS 3 3 GENOME POLYPROTEIN, COAT PROTEIN VP3 RESIDUES 341-577 138950
18 5BNN 3 C Capsid protein VP3 UNP residues 318-564 138951
19 1NCQ 3 C COAT PROTEIN VP3 147712
20 1D4M 3 3 PROTEIN (COXSACKIEVIRUS A9) VP3 138949
21 4RHV 3 3 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP3) 147712
22 1EAH 3 3 POLIOVIRUS TYPE 2 COAT PROTEINS VP1 TO VP4 138950
23 4Q4V 3 3 Coxsackievirus capsid protein VP3 138950
24 1K5M 3 C COAT PROTEIN VP3 (P1C) 147712
25 1QJU 3 3 PROTEIN VP3 RESIDUES 331-568 147711
26 3VBF 3 C Genome Polyprotein, capsid protein VP3 STRAIN FUYANG, ANHUI. P.R.C/17.08/1 138948
27 2PLV 3 3 HUMAN POLIOVIRUS TYPE 1 (SUBUNIT VP3) 138950
28 4PDW 3 C Genome polyprotein resdiues 332-657 147712 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
29 4CDQ 3 C VP3 138948
30 3ZFE 3 C VP3 VIRION OF HUMAN ENTEROVIRUS 71 138948
31 1QJX 3 3 PROTEIN VP3 RESIDUES 331-568 147711
32 1QJY 3 3 PROTEIN VP3 RESIDUES 331-568 147711
33 1NCR 3 C coat protein VP3 147711
34 3VBO 3 C Genome Polyprotein, capsid protein VP3 138948
35 1AYN 3 3 HUMAN RHINOVIRUS 16 COAT PROTEIN 169066
36 1C8M 3 3 HUMAN RHINOVIRUS 16 COAT PROTEIN RESIDUES 331-568 147711
37 1AR7 4 3 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
38 1ND3 3 C coat protein VP3 147711
39 1BEV 3 3 BOVINE ENTEROVIRUS COAT PROTEINS VP1 TO VP4 12064
40 4JGY 3 C Polyprotein, capsid protein VP3 STRAIN NINGBO.CHN/028-2/2009 138948
41 1AL2 4 3 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
42 1PO1 4 3 POLIOVIRUS TYPE 1 MAHONEY 138950
43 1AR9 4 3 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
44 4RQP 2 B, F, J, N, R Capsid protein VP3 138948
45 5C4W 3 C VP3 138948
46 1H8T 3 C ECHOVIRUS 11 COAT PROTEIN VP3 138949
47 1PO2 4 3 POLIOVIRUS TYPE 1 MAHONEY 138950
48 1ASJ 4 3 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
49 1Z7S 3 3 Human coxsackievirus A21 Viral Protein 3 138950
50 1OOP 3 C Coat protein VP3 138949
51 4CDX 3 C VP3 138948
52 4RR3 2 B, F, J, N, R Capsid protein VP3 138948
53 3VDD 3 C Protein VP3 UNP residues 331-567 147711
54 1NA1 3 C Coat protein VP3 147712
55 5C9A 3 C VP3 138948
56 4CDU 3 C VP3 138948
57 1VBB 4 3 POLIOVIRUS TYPE 3 138950
58 1POV 3 3 POLIOVIRUS NATIVE EMPTY CAPSID (TYPE 1) 138950
59 1AR6 4 3 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
60 1AR8 4 3 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
61 4N53 3 C Capsid protein VP3 138948
62 4CDW 3 C VP3 138948
63 4CEY 3 C VP3 138948
64 1VBC 4 3 POLIOVIRUS TYPE 3 138950
65 3TN9 3 3 Protein VP3 147711
66 3ZFG 3 C VP3 VIRION OF HUMAN ENTEROVIRUS 71 138948
67 1VBE 4 3 POLIOVIRUS TYPE 3 138950
68 4CEW 3 C VP3 138948
69 3VBS 3 C Genome Polyprotein, capsid protein VP3 138948
70 5ABJ 3 C VP3 UNP RESIDUES 324-565 138948
71 1VBD 4 3 POLIOVIRUS TYPE 1 MAHONEY P1/MAHONEY 138950
72 3ZFF 3 C VP3 138948
73 1RHI 3 3 HUMAN RHINOVIRUS 3 COAT PROTEIN 147712
74 1VBA 4 3 POLIOVIRUS TYPE 3 138950
75 4JGZ 3 C Polyprotein, capsid protein VP3 STRAIN NINGBO.CHN/028-2/2009 138948
76 1MQT 3 C Polyprotein Capsid Protein SVDV COAT PROTEIN VP3 138949
77 1RVF 3 3 HUMAN RHINOVIRUS 14 COAT PROTEIN 147712
78 4GB3 3 3 coat protein 3 UNP residues 333-570 138949
79 2X5I 3 C VP3 138949
80 1PIV 4 3 POLIOVIRUS TYPE 3 (SUBUNIT VP3) 138950
81 1COV 3 3 COXSACKIEVIRUS COAT PROTEIN 138949
82 1R1A 3 3 HUMAN RHINOVIRUS 1A COAT PROTEIN (SUBUNIT VP3) 147711
83 1EV1 3 3 ECHOVIRUS 1 VP1, VP2, VP3, VP4 138949
84 4N43 3 C Capsid protein VP3 EV71 capsid protein VP3 138948
85 3VBR 3 C Genome Polyprotein, capsid protein VP3 138948
86 4YVS 2 B, E, H, K, N Capsid protein VP3 138948
87 1V9U 3 3 Coat protein VP3 147711
88 4RS5 1 B, E, H, K, N Capsid protein VP3 138948
89 4GMP 3 3 capsid protein VP3 UNP residues 324-565 138948
90 4AED 3 C VP3 138948
91 3VBU 3 C Genome Polyprotein, capsid protein VP3 138948
92 4YVW 2 B, F, H, K, N Capsid protein VP3 138948
93 3DPR 3 C Protein VP3 147711
94 4L3B 3 C Protein VP3 UNP residues 331-567 147711
95 6LQD 3 C Capsid protein VP3 138948 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
96 6LHK 3 C VP3 protein 138948 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
97 6LHL 3 C VP3 protein 138948 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
98 6LHO 3 C VP3 protein 138948 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
99 6LHP 5 C VP3 protein 138948 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
100 6LHQ 3 C VP3 protein 138948 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
101 6LHA 3 C VP3 protein 138948 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
102 6LHB 3 C VP3 138948 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
103 6LHC 3 C VP3 138948 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
104 6UH1 3 C VP3 138948 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
105 6UH6 3 C VP3 138948 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
106 6UH7 3 C VP3 138948 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
107 6SNW 3 C Capsid protein VP3 138948 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
108 6SNB 3 C Capsid protein VP3 138948 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
109 6SMG 3 C Capsid protein VP3 138948 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
110 6SK5 4 C Rhinovirus B5 VP3 147712 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
111 6SK6 4 C Rhinovirus B5 VP3 147712 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
112 6SK7 3 C VP3 capsid protein 147711 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
113 6P9O 3 3 VP3 UNP residues 342-579 138950
114 6P9W 3 3 VP3 UNP residues 342-579 138950
115 6RJF 3 3 VP3 138949
116 6O06 3 C VP3 UNP residues 331-569 138949
117 6MZI 2 B viral protein 3 UNP residues 318-564 138951
118 6I2K 3 C Polyprotein 138948
119 6ILL 3 C Capsid protein VP3 138949
120 6ILM 3 C Capsid protein VP3 138949
121 6ILN 3 C Capsid protein VP3 138949
122 6ILO 3 C Capsid protein VP3 138949
123 6ILP 3 C Capsid protein VP3 138949
124 6ILJ 3 C Capsid protein VP3 138949
125 6ILK 3 C Capsid protein VP3 138949
126 6IIO 3 C VP3 138948
127 6IIJ 3 C VP3 138948
128 6AKS 3 C VP3 138948
129 6AKT 3 C VP3 138948
130 6AKU 3 C VP3 138948
131 6HHT 3 C1, C2, F1, F2, I1, I2, L1, L2, O1, O2, R1, R2, U1, U2, X1, X2, a2, d2, g2, j2, m2, p2, s2, v2, y2 Echovirus 18 capsid protein 3 138949
132 6AJ7 5 C Capsid protein VP3 138951
133 6AJ9 7 C Capsid protein VP3 138951
134 6AJ2 3 C Capsid protein VP3 138951
135 6AJ3 3 C Capsid protein VP3 138951
136 6AJ0 3 C Capsid protein VP3 138951
137 6HBG 3 C Echovirus 18 viral protein 3 138949 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
138 6HBH 3 C Echovirus 18 capsid protein 3 138949
139 6HBJ 3 C Viral protein 3 138949 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
140 6HBK 2 C, F, I, L, O, R, U, X, a, d, g Echovirus 18 capsid protein 2 138949
141 6HBL 3 C, F, I, L, O, R, U, X, a, d, g, j, m, p, s Echovirus 18 capsid protein 3 138949
142 6ACY 3 C VP3 138948
143 6ACZ 3 C VP3 138948
144 6AD0 5 C VP3 138948
145 6AD1 3 C VP3 138948
146 6ACU 3 C VP3 138948
147 6ACW 3 C VP3 138948
148 6GZV 3 C Capsid protein VP3 138949 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
149 6DIZ 3 C VP3 138948
150 5ZUD 3 C VP3 138948
151 5ZUF 3 C VP3 138948
152 6CV1 2 B viral protein 3 UNP residues 1-247 138951
153 6CV2 2 B viral protein 3 UNP residues 1-247 138951
154 6CV3 2 B viral protein 3 UNP residues 1-247 138951
155 6CV4 2 B viral protein 3 UNP residues 1-247 138951
156 6CV5 2 B viral protein 3 UNP residues 1-247 138951
157 6CVB 2 B viral protein 3 UNP residues 1-247 138951
158 6CSA 2 B viral protein 3 UNP residues 318-564 138951
159 6CSG 2 B viral protein 3 UNP residues 318-564 138951
160 6CSH 2 B viral protein 3 UNP residues 318-564 138951
161 6CRP 2 B viral protein 3 UNP residues 318-564 138951
162 6CRR 2 B viral protein 3 UNP residues 318-564 138951
163 6CRS 2 B viral protein 3 UNP residues 318-564 138951
164 6CRU 2 B viral protein 3 UNP residues 318-564 138951
165 6CS3 2 B viral protein 3 UNP residues 318-564 138951
166 6CS4 2 B viral protein 3 UNP residues 318-564 138951
167 6CS5 2 B viral protein 3 UNP residues 318-564 138951
168 6CS6 2 B viral protein 3 UNP residues 318-564 138951
169 5YHQ 2 C Capsid protein VP3 UNP RESIDUES 326-565 138948
170 6EIT 3 3 VP3 138950
171 5XS4 3 C Genome polyprotein UNP residues 326-565 138948
172 5XS5 3 C Genome polyprotein UNP residues 326-565 138948
173 5XS7 5 C Genome polyprotein UNP residues 326-565 138948
174 5W3L 2 B viral protein 3 UNP residues 332-567 147712
175 5W3M 4 B viral protein 3 UNP residues 332-567 147712
176 5W3O 4 B viral protein 3 UNP residues 332-567 147712
177 5W3E 4 B viral protein 3 UNP residues 332-567 147712
178 5O5P 3 3 Capsid proteins, VP3 138950
179 5O5B 3 3 Capsid proteins 138950
180 5TSL 1 C coxsackievirus A16 138948
181 5KWL 3 3 VP3 UNP residues 342-571 138950
182 5KTZ 3 3 Genome polyprotein UNP residues 342-572 138950
183 5KU0 3 3 VP3 UNP residues 342-571 138950
184 5KU2 3 3 VP3 UNP residues 342-571 138950
185 3JD7 3 3 Capsid protein VP3 UNP residues 333-570 138949
186 3JBC 3 3 Capsid protein VP3 UNP residues 342-578 138950
187 3JBD 3 3 Capsid protein VP3 UNP residues 342-578 138950
188 3JBE 3 3 Capsid protein VP3 UNP residues 342-578 138950
189 3JBF 3 3 Capsid protein VP3 UNP residues 342-578 138950
190 3JBG 3 3 Capsid protein VP3 UNP residues 342-578 138950
191 3J9F 3 3 Protein VP3 UNP residues 342-579 138950
192 3J91 3 3 VP3 UNP residues 324-565 138948
193 3J8F 3 3 Capsid protein VP3 UNP residues 342-579 138950
194 4C0U 3 C VP3 138948
195 4C0Y 3 C VP3 138948
196 4C10 5 C VP2 138948
197 3J48 3 3 Protein VP3 UNP residues 342-579 138950
198 3J3O 6 3 Protein VP3 UNP residues 342-579 138950
199 3J3P 5 3 Protein VP3 UNP residues 342-579 138950
200 3J2J 2 B Protein VP3 UNP residues 331-568 138949
201 3J22 3 C capsid protein VP3 UNP residues 324-562 138948
202 3J23 3 C capsid protein VP3 UNP residues 324-562 138948
203 3IYP 2 B Polyprotein 138949
204 3IYB 3 3 Precursor polyprotein 138950
205 3IYC 3 3 Precursor polyprotein 138950
206 3EPC 5 3 Protein VP3 138950
207 3EPD 6 3 protein VP3 138950
208 3EPF 5 3 Protein VP3 138950
209 2C8I 3 C ECHOVIRUS 11 COAT PROTEIN VP3 138949
210 1Z7Z 3 3 human coxsackievirus A21 Viral Protein 3 residues 3043-3234 138950
211 1UPN 3 C ECHOVIRUS 11 COAT PROTEIN VP3 138949
212 1NN8 4 3 coat protein VP3 138950
213 1M11 4 3 COAT PROTEIN VP3 138949
214 1JEW 4 3 COXSACKIEVIRUS CAPSID, COAT PROTEIN VP3 Residues 333-570 138949
215 1DGI 4 3 VP3 138950
216 1D3E 4 3 PROTEIN (RHINOVIRUS 16 COAT PROTEIN VP3) 169066
217 1D3I 4 3 PROTEIN (RHINOVIRUS 14 COAT PROTEIN VP3) 169066
218 1VRH 3 3 RHINOVIRUS 14 147712
219 1RUC 3 3 RHINOVIRUS 14 147712
220 1RUD 3 3 RHINOVIRUS 14 147712
221 1RUE 3 3 RHINOVIRUS 14 147712
222 1RUF 3 3 RHINOVIRUS 14 147712
223 1RUG 3 3 RHINOVIRUS 14 147712
224 1RUH 3 3 RHINOVIRUS 14 147712
225 1RUI 3 3 RHINOVIRUS 14 147712
226 1RUJ 3 3 RHINOVIRUS 14 147712
227 1HRV 3 3 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP3) 147712
228 2HWB 3 3 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP3) 147712
229 2HWC 3 3 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP3) 147712
230 2HWD 3 3 HUMAN RHINOVIRUS 1A COAT PROTEIN (SUBUNIT VP3) 147711
231 2HWE 3 3 HUMAN RHINOVIRUS 1A COAT PROTEIN (SUBUNIT VP3) 147711
232 2HWF 3 3 HUMAN RHINOVIRUS 1A COAT PROTEIN (SUBUNIT VP3) 147711
233 1HRI 3 3 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP3) 147712
234 1R09 3 3 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP3) 147712
235 1R08 3 3 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP3) 147712
236 1RMU 3 3 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP3) 147712
237 2R04 3 3 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP3) 147712
238 2R06 3 3 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP3) 147712
239 2R07 3 3 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP3) 147712
240 2RM2 3 3 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP3) 147712
241 2RMU 3 3 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP3) 147712
242 2RR1 3 3 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP3) 147712
243 2RS1 3 3 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP3) 147712
244 2RS3 3 3 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP3) 147712
245 2RS5 3 3 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP3) 147712