Sequence Similarity Clusters for the Entities in PDB 6ILO

Entity #1 | Chains: A
Capsid protein VP1 protein, length: 227 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 76896
95 % 1 1 54644
90 % 1 1 51700
70 % 1 1 45113
50 % 1 2 31313
40 % 1 9 8388
30 % 3 15 4905
Entity #2 | Chains: B
Capsid protein VP2 protein, length: 249 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 7 12935
95 % 4 7 12767
90 % 4 7 12592
70 % 14 31 804
50 % 94 213 197
40 % 94 213 214
30 % 99 226 215
Entity #3 | Chains: C
Capsid protein VP3 protein, length: 234 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 63842
95 % 4 7 12768
90 % 4 7 12593
70 % 14 31 805
50 % 11 23 931
40 % 103 227 192
30 % 124 268 126

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1OOP 3 C Coat protein VP3 138949
2 1MQT 3 C Polyprotein Capsid Protein SVDV COAT PROTEIN VP3 138949
3 4GB3 3 3 coat protein 3 UNP residues 333-570 138949
4 1COV 3 3 COXSACKIEVIRUS COAT PROTEIN 138949
5 1EV1 3 3 ECHOVIRUS 1 VP1, VP2, VP3, VP4 138949
6 6RJF 3 3 VP3 138949
7 6O06 3 C VP3 UNP residues 331-569 138949
8 6ILL 3 C Capsid protein VP3 138949
9 6ILM 3 C Capsid protein VP3 138949
10 6ILN 3 C Capsid protein VP3 138949
11 6ILO 3 C Capsid protein VP3 138949
12 6ILP 3 C Capsid protein VP3 138949
13 6ILJ 3 C Capsid protein VP3 138949
14 6ILK 3 C Capsid protein VP3 138949
15 6HHT 3 C1, C2, F1, F2, I1, I2, L1, L2, O1, O2, R1, R2, U1, U2, X1, X2, a2, d2, g2, j2, m2, p2, s2, v2, y2 Echovirus 18 capsid protein 3 138949
16 6HBG 3 C Echovirus 18 viral protein 3 138949 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
17 6HBH 3 C Echovirus 18 capsid protein 3 138949
18 6HBJ 3 C Viral protein 3 138949 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
19 6HBK 2 C, F, I, L, O, R, U, X, a, d, g Echovirus 18 capsid protein 2 138949
20 6HBL 3 C, F, I, L, O, R, U, X, a, d, g, j, m, p, s Echovirus 18 capsid protein 3 138949
21 6GZV 3 C Capsid protein VP3 138949 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
22 3JD7 3 3 Capsid protein VP3 UNP residues 333-570 138949
23 1JEW 4 3 COXSACKIEVIRUS CAPSID, COAT PROTEIN VP3 Residues 333-570 138949