6ILO

Cryo-EM structure of empty Echovirus 6 particle at PH 7.4


Sequence Similarity Clusters for the Entities in PDB 6ILO

Entity #1 | Chains: A
Capsid protein VP1 protein, length: 227 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 86621
95 % 1 1 61734
90 % 1 1 54370
70 % 1 1 41868
50 % 1 2 28045
40 % 1 9 8372
30 % 3 15 5102
Entity #2 | Chains: B
Capsid protein VP2 protein, length: 249 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 7 13955
95 % 4 7 13479
90 % 4 7 13270
70 % 14 31 868
50 % 115 235 199
40 % 115 235 213
30 % 120 248 215
Entity #3 | Chains: C
Capsid protein VP3 protein, length: 234 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 90110
95 % 4 7 13442
90 % 4 7 13226
70 % 14 31 865
50 % 122 245 177
40 % 124 249 186
30 % 145 291 131

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

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ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1D4M 3 3 PROTEIN (COXSACKIEVIRUS A9) VP3 138949
2 1H8T 3 C ECHOVIRUS 11 COAT PROTEIN VP3 138949
3 1OOP 3 C Coat protein VP3 138949
4 1MQT 3 C Polyprotein Capsid Protein SVDV COAT PROTEIN VP3 138949
5 4GB3 3 3 coat protein 3 UNP residues 333-570 138949
6 2X5I 3 C VP3 138949
7 1COV 3 3 COXSACKIEVIRUS COAT PROTEIN 138949
8 1EV1 3 3 ECHOVIRUS 1 VP1, VP2, VP3, VP4 138949
9 6RJF 3 3 VP3 138949
10 6O06 3 C VP3 UNP residues 331-569 138949
11 6ILL 3 C Capsid protein VP3 138949
12 6ILM 3 C Capsid protein VP3 138949
13 6ILN 3 C Capsid protein VP3 138949
14 6ILO 3 C Capsid protein VP3 138949
15 6ILP 3 C Capsid protein VP3 138949
16 6ILJ 3 C Capsid protein VP3 138949
17 6ILK 3 C Capsid protein VP3 138949
18 6HHT 3 C1, C2, F1, F2, I1, I2, L1, L2, O1, O2, R1, R2, U1, U2, X1, X2, a2, d2, g2, j2, m2, p2, s2, v2, y2 Echovirus 18 capsid protein 3 138949
19 6HBG 3 C Echovirus 18 viral protein 3 138949 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
20 6HBH 3 C Echovirus 18 capsid protein 3 138949
21 6HBJ 3 C Viral protein 3 138949 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
22 6HBK 2 C, F, I, L, O, R, U, X, a, d, g Echovirus 18 capsid protein 2 138949
23 6HBL 3 C, F, I, L, O, R, U, X, a, d, g, j, m, p, s Echovirus 18 capsid protein 3 138949
24 6GZV 3 C Capsid protein VP3 138949 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
25 3JD7 3 3 Capsid protein VP3 UNP residues 333-570 138949
26 3J2J 2 B Protein VP3 UNP residues 331-568 138949
27 3IYP 2 B Polyprotein 138949
28 2C8I 3 C ECHOVIRUS 11 COAT PROTEIN VP3 138949
29 1UPN 3 C ECHOVIRUS 11 COAT PROTEIN VP3 138949
30 1M11 4 3 COAT PROTEIN VP3 138949
31 1JEW 4 3 COXSACKIEVIRUS CAPSID, COAT PROTEIN VP3 Residues 333-570 138949