6ILO

Cryo-EM structure of empty Echovirus 6 particle at PH 7.4


Sequence Similarity Clusters for the Entities in PDB 6ILO

Entity #1 | Chains: A
Capsid protein VP1 protein, length: 227 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 86772
95 % 1 1 57689
90 % 1 1 54432
70 % 1 1 47348
50 % 1 2 28552
40 % 1 9 8892
30 % 3 15 5112
Entity #2 | Chains: B
Capsid protein VP2 protein, length: 249 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 7 14012
95 % 4 7 13581
90 % 4 7 13419
70 % 14 31 870
50 % 115 235 202
40 % 115 235 213
30 % 120 248 212
Entity #3 | Chains: C
Capsid protein VP3 protein, length: 234 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 86771
95 % 4 7 13582
90 % 4 7 13420
70 % 14 31 871
50 % 122 245 177
40 % 124 249 187
30 % 124 249 195

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 6ILL 3 C Capsid protein VP3 138949
2 6ILM 3 C Capsid protein VP3 138949
3 6ILN 3 C Capsid protein VP3 138949
4 6ILO 3 C Capsid protein VP3 138949
5 6ILP 3 C Capsid protein VP3 138949
6 6ILJ 3 C Capsid protein VP3 138949
7 6ILK 3 C Capsid protein VP3 138949