Sequence Similarity Clusters for the Entities in PDB 6IMM

Entity #1 | Chains: N,T,Z,a
Spike glycoprotein E1 protein, length: 439 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 24905
95 % 1 1 25297
90 % 1 1 22621
70 % 1 3 6688
50 % 1 3 6374
40 % 6 10 1862
30 % 6 10 1877
Entity #2 | Chains: P,V,d,e
Spike glycoprotein E2 protein, length: 388 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 24903
95 % 1 1 19837
90 % 1 1 19405
70 % 1 2 11413
50 % 1 2 10436
40 % 9 13 1410
30 % 9 13 1417
Entity #3 | Chains: R,X,h,i
Assembly protein E3 protein, length: 69 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 24904
95 % 1 1 23287
90 % 1 1 20160
70 % 1 1 22370
50 % 1 1 19711
40 % 1 1 15348
30 % 1 1 16201

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures