Sequence Similarity Clusters for the Entities in PDB 6IMM

Entity #1 | Chains: N,T,Z,a
Spike glycoprotein E1 protein, length: 439 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 25320
95 % 1 1 24033
90 % 1 1 23299
70 % 1 3 6310
50 % 1 3 6093
40 % 6 10 1755
30 % 6 10 1734
Entity #2 | Chains: P,V,d,e
Spike glycoprotein E2 protein, length: 388 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 28136
95 % 1 1 22110
90 % 1 1 23297
70 % 1 2 9705
50 % 1 2 8986
40 % 9 13 1332
30 % 9 13 1345
Entity #3 | Chains: R,X,h,i
Assembly protein E3 protein, length: 69 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 28137
95 % 1 1 22112
90 % 1 1 21490
70 % 1 1 21352
50 % 1 1 18833
40 % 1 1 17261
30 % 1 1 15461

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures