Sequence Similarity Clusters for the Entities in PDB 6IMM

Entity #1 | Chains: N,T,Z,a
Spike glycoprotein E1 protein, length: 439 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 25592
95 % 1 1 22284
90 % 1 1 21689
70 % 1 3 6426
50 % 1 3 6154
40 % 6 10 1786
30 % 6 10 1765
Entity #2 | Chains: P,V,d,e
Spike glycoprotein E2 protein, length: 388 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 21938
95 % 1 1 24248
90 % 1 1 18650
70 % 1 2 11023
50 % 1 2 9686
40 % 9 13 1333
30 % 9 13 1363
Entity #3 | Chains: R,X,h,i
Assembly protein E3 protein, length: 69 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 28415
95 % 1 1 24249
90 % 1 1 23506
70 % 1 1 17323
50 % 1 1 15485
40 % 1 1 14349
30 % 1 1 15586

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 6IMM 1 N, T, Z, a Spike glycoprotein E1 11034