6IMM

Cryo-EM structure of an alphavirus, Sindbis virus


Sequence Similarity Clusters for the Entities in PDB 6IMM

Entity #1 | Chains: N,T,Z,a
Spike glycoprotein E1 protein, length: 439 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 27637
95 % 1 1 27769
90 % 1 1 26831
70 % 1 3 7479
50 % 1 3 7115
40 % 7 11 1890
30 % 7 11 1943
Entity #2 | Chains: P,V,d,e
Spike glycoprotein E2 protein, length: 388 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 27635
95 % 1 1 22870
90 % 1 1 26829
70 % 1 2 12584
50 % 1 2 10309
40 % 15 19 773
30 % 15 19 800
Entity #3 | Chains: R,X,h,i
Assembly protein E3 protein, length: 69 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 27636
95 % 1 1 25680
90 % 1 1 26830
70 % 1 1 22603
50 % 1 1 21391
40 % 1 1 19583
30 % 1 1 17550

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 6IMM 1 N, T, Z, a Spike glycoprotein E1 11034
2 3J0F 2 E, F, G, H E1 envelope glycoprotein UNP residues 807-1245 11034
3 1LD4 3 M, N, O, P Spike glycoprotein E1 11034