6IMM

Cryo-EM structure of an alphavirus, Sindbis virus


Sequence Similarity Clusters for the Entities in PDB 6IMM

Entity #1 | Chains: N,T,Z,a
Spike glycoprotein E1 protein, length: 439 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 27548
95 % 1 1 27746
90 % 1 1 26769
70 % 1 3 7435
50 % 1 3 7063
40 % 7 11 1925
30 % 7 11 1939
Entity #2 | Chains: P,V,d,e
Spike glycoprotein E2 protein, length: 388 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 27546
95 % 1 1 21912
90 % 1 1 21368
70 % 1 2 12560
50 % 1 2 11441
40 % 15 19 765
30 % 15 19 797
Entity #3 | Chains: R,X,h,i
Assembly protein E3 protein, length: 69 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 27547
95 % 1 1 25594
90 % 1 1 24767
70 % 1 1 22526
50 % 1 1 21359
40 % 1 1 18265
30 % 1 1 17520

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 6IMM 2 P, V, d, e Spike glycoprotein E2 11034