Sequence Similarity Clusters for the Entities in PDB 6IMM

Entity #1 | Chains: N,T,Z,a
Spike glycoprotein E1 protein, length: 439 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 29167
95 % 1 1 22899
90 % 1 1 24027
70 % 1 3 6592
50 % 1 3 6313
40 % 6 10 1798
30 % 6 10 1828
Entity #2 | Chains: P,V,d,e
Spike glycoprotein E2 protein, length: 388 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 21928
95 % 1 1 20267
90 % 1 1 19798
70 % 1 2 10003
50 % 1 2 10307
40 % 9 13 1399
30 % 9 13 1403
Entity #3 | Chains: R,X,h,i
Assembly protein E3 protein, length: 69 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 20330
95 % 1 1 18730
90 % 1 1 24026
70 % 1 1 18301
50 % 1 1 19382
40 % 1 1 14684
30 % 1 1 15947

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 6IMM 2 P, V, d, e Spike glycoprotein E2 11034