Sequence Similarity Clusters for the Entities in PDB 6IMM

Entity #1 | Chains: N,T,Z,a
Spike glycoprotein E1 protein, length: 439 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 28368
95 % 1 1 24235
90 % 1 1 23474
70 % 1 3 6398
50 % 1 3 6151
40 % 6 10 1784
30 % 6 10 1807
Entity #2 | Chains: P,V,d,e
Spike glycoprotein E2 protein, length: 388 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 21947
95 % 1 1 24233
90 % 1 1 23472
70 % 1 2 9772
50 % 1 2 9651
40 % 9 13 1344
30 % 9 13 1361
Entity #3 | Chains: R,X,h,i
Assembly protein E3 protein, length: 69 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 28367
95 % 1 1 24234
90 % 1 1 23473
70 % 1 1 19912
50 % 1 1 18975
40 % 1 1 17387
30 % 1 1 15580

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 6NK5 2 E, F, G, H E2 glycoprotein UNP residues 330-748 37124
2 6NK6 3 E, F, G, H E2 glycoprotein UNP residues 330-748 37124
3 6NK7 2 E, F, G, H E2 glycoprotein UNP residues 330-748 37124 3.4.21.90 | Details
4 6MWV 2 B, F, J, N E2 ectodomain (UNP residues 325-744) 11021
5 6MWX 2 B, F, J, N E2 ectodomain (UNP residues 325-744) 11021
6 6MX4 2 B, E, H, K E2 ectodomain (UNP residues 325-744) 11021
7 6MW9 2 B, F, J, N E2 ectodomain (UNP residues 325-744) 11021
8 6MWC 2 B, F, J, N E2 ectodomain (UNP residues 325-744) 11021
9 6IMM 2 P, V, d, e Spike glycoprotein E2 11034
10 3J0F 3 I, J, K, L E2 envelope glycoprotein UNP residues 329-751 11034
11 3J0C 2 B, E, H, K E2 envelope glycoprotein full length (UNP residues 335-757) 11036
12 2YEW 3 C, F, I, L E2 ENVELOPE GLYCOPROTEIN 11020
13 2XFC 2 B, E, G, I E2 ENVELOPE GLYCOPROTEIN ECTODOMAIN, RESIDUES 326-748 37124