6IMM

Cryo-EM structure of an alphavirus, Sindbis virus


Sequence Similarity Clusters for the Entities in PDB 6IMM

Entity #1 | Chains: N,T,Z,a
Spike glycoprotein E1 protein, length: 439 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 26276
95 % 1 1 26639
90 % 1 1 25767
70 % 1 3 7116
50 % 1 3 6760
40 % 7 11 1796
30 % 7 11 1820
Entity #2 | Chains: P,V,d,e
Spike glycoprotein E2 protein, length: 388 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 26274
95 % 1 1 21819
90 % 1 1 21234
70 % 1 2 12029
50 % 1 2 10996
40 % 10 14 1378
30 % 10 14 1416
Entity #3 | Chains: R,X,h,i
Assembly protein E3 protein, length: 69 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 26275
95 % 1 1 24546
90 % 1 1 23753
70 % 1 1 21730
50 % 1 1 20608
40 % 1 1 17611
30 % 1 1 16931

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 6ODF 2 B, D, F, H E2 UNP residues 325-744 11021 3.4.21.90 | Details
2 6NK5 2 E, F, G, H E2 glycoprotein UNP residues 330-748 37124
3 6NK6 3 E, F, G, H E2 glycoprotein UNP residues 330-748 37124
4 6NK7 2 E, F, G, H E2 glycoprotein UNP residues 330-748 37124 3.4.21.90 | Details
5 6MWV 2 B, F, J, N E2 ectodomain (UNP residues 325-744) 11021
6 6MWX 2 B, F, J, N E2 ectodomain (UNP residues 325-744) 11021
7 6MX4 2 B, E, H, K E2 ectodomain (UNP residues 325-744) 11021
8 6MW9 2 B, F, J, N E2 ectodomain (UNP residues 325-744) 11021
9 6MWC 2 B, F, J, N E2 ectodomain (UNP residues 325-744) 11021
10 6IMM 2 P, V, d, e Spike glycoprotein E2 11034
11 3J0F 3 I, J, K, L E2 envelope glycoprotein UNP residues 329-751 11034
12 3J0C 2 B, E, H, K E2 envelope glycoprotein full length (UNP residues 335-757) 11036
13 2YEW 3 C, F, I, L E2 ENVELOPE GLYCOPROTEIN 11020
14 2XFC 2 B, E, G, I E2 ENVELOPE GLYCOPROTEIN ECTODOMAIN, RESIDUES 326-748 37124