Sequence Similarity Clusters for the Entities in PDB 6IMM

Entity #1 | Chains: N,T,Z,a
Spike glycoprotein E1 protein, length: 439 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 24787
95 % 1 1 25222
90 % 1 1 24405
70 % 1 3 6673
50 % 1 3 6357
40 % 6 10 1853
30 % 6 10 1885
Entity #2 | Chains: P,V,d,e
Spike glycoprotein E2 protein, length: 388 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 24785
95 % 1 1 20569
90 % 1 1 24403
70 % 1 2 11411
50 % 1 2 9400
40 % 9 13 1412
30 % 9 13 1417
Entity #3 | Chains: R,X,h,i
Assembly protein E3 protein, length: 69 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 24786
95 % 1 1 23205
90 % 1 1 22519
70 % 1 1 20639
50 % 1 1 19643
40 % 1 1 18008
30 % 1 1 16168

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 6IMM 2 P, V, d, e Spike glycoprotein E2 11034
2 3J0F 3 I, J, K, L E2 envelope glycoprotein UNP residues 329-751 11034