Sequence Similarity Clusters for the Entities in PDB 6IMM

Entity #1 | Chains: N,T,Z,a
Spike glycoprotein E1 protein, length: 439 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 29187
95 % 1 1 24874
90 % 1 1 24069
70 % 1 3 6571
50 % 1 3 6296
40 % 6 10 1829
30 % 6 10 1853
Entity #2 | Chains: P,V,d,e
Spike glycoprotein E2 protein, length: 388 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 22515
95 % 1 1 20263
90 % 1 1 24067
70 % 1 2 10035
50 % 1 2 10313
40 % 9 13 1398
30 % 9 13 1406
Entity #3 | Chains: R,X,h,i
Assembly protein E3 protein, length: 69 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 21441
95 % 1 1 24873
90 % 1 1 19771
70 % 1 1 21972
50 % 1 1 19427
40 % 1 1 17788
30 % 1 1 15965

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 6IMM 2 P, V, d, e Spike glycoprotein E2 11034