Sequence Similarity Clusters for the Entities in PDB 6IMM

Entity #1 | Chains: N,T,Z,a
Spike glycoprotein E1 protein, length: 439 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 25113
95 % 1 1 25488
90 % 1 1 24661
70 % 1 3 6731
50 % 1 3 6429
40 % 6 10 1866
30 % 6 10 1895
Entity #2 | Chains: P,V,d,e
Spike glycoprotein E2 protein, length: 388 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 25111
95 % 1 1 20796
90 % 1 1 22773
70 % 1 2 11488
50 % 1 2 10515
40 % 9 13 1432
30 % 9 13 1437
Entity #3 | Chains: R,X,h,i
Assembly protein E3 protein, length: 69 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 25112
95 % 1 1 23430
90 % 1 1 22774
70 % 1 1 20823
50 % 1 1 18438
40 % 1 1 18174
30 % 1 1 16304

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 6IMM 3 R, X, h, i Assembly protein E3 11034