Sequence Similarity Clusters for the Entities in PDB 6J0B

Entity #1 | Chains: A,B,C,D,E,F,G,H,I,J,K,L
Pvc2 protein, length: 355 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 1789
95 % 2 3 2360
90 % 2 3 2430
70 % 2 3 2478
50 % 2 3 2561
40 % 7 8 2066
30 % 7 8 2102
Entity #2 | Chains: a,b,c,d,e,f,g,h,i,j,k,l
Pvc1 protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 2429
95 % 3 3 3116
90 % 3 3 3206
70 % 6 6 2495
50 % 6 6 2510
40 % 6 6 2524
30 % 6 6 2504

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 6RBN 1 A, B Afp1 42906
2 6RAP 1 A, B Afp1 42906
3 6RAO 1 A, B Afp1 42906
4 6J0N 8 1, 2, 3, 4, 5, z Pvc1 291112
5 6J0F 2 a, b, c, d, e, f Pvc1 291112
6 6J0B 2 a, b, c, d, e, f, g, h, i, j, k, l Pvc1 291112