Sequence Similarity Clusters for the Entities in PDB 6J0B

Entity #1 | Chains: A,B,C,D,E,F,G,H,I,J,K,L
Pvc2 protein, length: 355 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 1713
95 % 2 3 2341
90 % 2 3 2322
70 % 2 3 2369
50 % 2 3 2459
40 % 7 8 2030
30 % 7 8 2008
Entity #2 | Chains: a,b,c,d,e,f,g,h,i,j,k,l
Pvc1 protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 2369
95 % 3 3 3038
90 % 3 3 2973
70 % 6 6 2387
50 % 6 6 2411
40 % 6 6 2451
30 % 6 6 2422

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 6RBN 1 A, B Afp1 42906
2 6RAP 1 A, B Afp1 42906
3 6RAO 1 A, B Afp1 42906
4 6J0N 8 1, 2, 3, 4, 5, z Pvc1 291112
5 6J0F 2 a, b, c, d, e, f Pvc1 291112
6 6J0B 2 a, b, c, d, e, f, g, h, i, j, k, l Pvc1 291112