Sequence Similarity Clusters for the Entities in PDB 6J0B

Entity #1 | Chains: A,B,C,D,E,F,G,H,I,J,K,L
Pvc2 protein, length: 355 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 1796
95 % 2 3 2386
90 % 2 3 2443
70 % 2 3 2492
50 % 2 3 2517
40 % 7 8 2075
30 % 7 8 2101
Entity #2 | Chains: a,b,c,d,e,f,g,h,i,j,k,l
Pvc1 protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 2445
95 % 3 3 3103
90 % 3 3 3177
70 % 6 6 2541
50 % 6 6 2563
40 % 6 6 2595
30 % 6 6 2559

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 6RBN 1 A, B Afp1 42906
2 6RAP 1 A, B Afp1 42906
3 6RAO 1 A, B Afp1 42906
4 6J0N 8 1, 2, 3, 4, 5, z Pvc1 291112
5 6J0F 2 a, b, c, d, e, f Pvc1 291112
6 6J0B 2 a, b, c, d, e, f, g, h, i, j, k, l Pvc1 291112