6J0N

Cryo-EM Structure of an Extracellular Contractile Injection System, baseplate in extended state, refined in C6 symmetry


Sequence Similarity Clusters for the Entities in PDB 6J0N

Entity #1 | Chains: D,E,F,G,H,I
Pvc9 protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 14165
95 % 1 1 14390
90 % 1 1 14151
70 % 1 1 14984
50 % 1 1 12175
40 % 2 2 10659
30 % 2 2 9411
Entity #2 | Chains: J,K,L,M,N,O
Pvc11 protein, length: 728 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 14167
95 % 1 1 16124
90 % 1 1 16008
70 % 1 1 14985
50 % 1 1 13532
40 % 1 1 11409
30 % 1 1 10482
Entity #3 | Chains: P,Q,R,S,T,U
Pvc12 protein, length: 950 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 14166
95 % 1 1 14391
90 % 1 1 14152
70 % 1 1 13373
50 % 1 1 12176
40 % 2 2 10191
30 % 2 2 9412
Entity #4 | Chains: V,W,X,Y,Z,a
Pvc4 protein, length: 410 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 14169
95 % 1 1 16303
90 % 1 1 14154
70 % 1 1 13375
50 % 1 1 12178
40 % 3 3 9057
30 % 3 3 8416
Entity #5 | Chains: b,c,d,e,f,g
Pvc7 protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 14168
95 % 1 1 14392
90 % 1 1 14153
70 % 1 1 13374
50 % 3 3 8469
40 % 3 3 8118
30 % 3 3 7589
Entity #6 | Chains: h,i,j,k,l,m
Pvc2 protein, length: 355 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 1782
95 % 1 3 2352
90 % 1 3 2407
70 % 1 3 2465
50 % 1 3 2480
40 % 6 8 2105
30 % 6 8 2129
Entity #7 | Chains: n,o,p,q,r,s
Pvc5 protein, length: 152 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 14170
95 % 1 1 14393
90 % 1 1 14155
70 % 1 1 13376
50 % 2 2 10843
40 % 2 2 10206
30 % 2 2 9431
Entity #8 | Chains: 1,2,3,4,5,z
Pvc1 protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 2392
95 % 1 3 3040
90 % 1 3 3122
70 % 4 6 2524
50 % 4 6 2531
40 % 4 6 2560
30 % 4 6 2538
Entity #9 | Chains: t,u,v,w,x,y
Pvc3 protein, length: 440 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 14171
95 % 1 1 14394
90 % 1 1 14156
70 % 1 1 13377
50 % 1 1 12179
40 % 6 6 6901
30 % 6 6 6474

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures