6J0N

Cryo-EM Structure of an Extracellular Contractile Injection System, baseplate in extended state, refined in C6 symmetry


Sequence Similarity Clusters for the Entities in PDB 6J0N

Entity #1 | Chains: D,E,F,G,H,I
Pvc9 protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 14341
95 % 1 1 14258
90 % 1 1 15811
70 % 1 1 13250
50 % 1 1 12086
40 % 2 2 10081
30 % 2 2 9315
Entity #2 | Chains: J,K,L,M,N,O
Pvc11 protein, length: 728 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 17051
95 % 1 1 16057
90 % 1 1 15812
70 % 1 1 13252
50 % 1 1 12088
40 % 1 1 11333
30 % 1 1 10400
Entity #3 | Chains: P,Q,R,S,T,U
Pvc12 protein, length: 950 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 14622
95 % 1 1 14233
90 % 1 1 14026
70 % 1 1 13251
50 % 1 1 12087
40 % 2 2 10069
30 % 2 2 9301
Entity #4 | Chains: V,W,X,Y,Z,a
Pvc4 protein, length: 410 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 14623
95 % 1 1 14234
90 % 1 1 14027
70 % 1 1 13254
50 % 1 1 12089
40 % 3 3 8924
30 % 3 3 8318
Entity #5 | Chains: b,c,d,e,f,g
Pvc7 protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 17052
95 % 1 1 16058
90 % 1 1 13804
70 % 1 1 13253
50 % 3 3 8377
40 % 3 3 8033
30 % 3 3 7504
Entity #6 | Chains: h,i,j,k,l,m
Pvc2 protein, length: 355 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 1773
95 % 1 3 2321
90 % 1 3 2374
70 % 1 3 2435
50 % 1 3 2458
40 % 6 8 1977
30 % 6 8 2024
Entity #7 | Chains: n,o,p,q,r,s
Pvc5 protein, length: 152 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 17054
95 % 1 1 14235
90 % 1 1 14028
70 % 1 1 13255
50 % 2 2 10712
40 % 2 2 10082
30 % 2 2 9316
Entity #8 | Chains: 1,2,3,4,5,z
Pvc1 protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 2400
95 % 1 3 3000
90 % 1 3 3086
70 % 4 6 2501
50 % 4 6 2515
40 % 4 6 2545
30 % 4 6 2507
Entity #9 | Chains: t,u,v,w,x,y
Pvc3 protein, length: 440 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 14624
95 % 1 1 14236
90 % 1 1 14029
70 % 1 1 13256
50 % 1 1 12090
40 % 6 6 6811
30 % 6 6 6393

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures