6J0N

Cryo-EM Structure of an Extracellular Contractile Injection System, baseplate in extended state, refined in C6 symmetry


Sequence Similarity Clusters for the Entities in PDB 6J0N

Entity #1 | Chains: D,E,F,G,H,I
Pvc9 protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 18474
95 % 1 1 15165
90 % 1 1 16827
70 % 1 1 15722
50 % 1 1 12818
40 % 2 2 10659
30 % 2 2 9849
Entity #2 | Chains: J,K,L,M,N,O
Pvc11 protein, length: 728 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 14913
95 % 1 1 15167
90 % 1 1 14928
70 % 1 1 14095
50 % 1 1 14195
40 % 1 1 13192
30 % 1 1 10987
Entity #3 | Chains: P,Q,R,S,T,U
Pvc12 protein, length: 950 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 14912
95 % 1 1 15166
90 % 1 1 14927
70 % 1 1 14094
50 % 1 1 12819
40 % 2 2 10640
30 % 2 2 9831
Entity #4 | Chains: V,W,X,Y,Z,a
Pvc4 protein, length: 410 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 14915
95 % 1 1 15168
90 % 1 1 14673
70 % 1 1 14096
50 % 1 1 12820
40 % 3 3 9467
30 % 3 3 8803
Entity #5 | Chains: b,c,d,e,f,g
Pvc7 protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 14914
95 % 1 1 17129
90 % 1 1 16829
70 % 1 1 15723
50 % 3 3 8930
40 % 3 3 8532
30 % 3 3 7986
Entity #6 | Chains: h,i,j,k,l,m
Pvc2 protein, length: 355 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 1915
95 % 1 3 2503
90 % 1 3 2571
70 % 1 3 2612
50 % 1 3 2641
40 % 6 8 2177
30 % 6 8 2206
Entity #7 | Chains: n,o,p,q,r,s
Pvc5 protein, length: 152 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 14916
95 % 1 1 15169
90 % 1 1 14929
70 % 1 1 14097
50 % 2 2 11348
40 % 2 2 10660
30 % 2 2 9850
Entity #8 | Chains: 1,2,3,4,5,z
Pvc1 protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 2556
95 % 1 3 3268
90 % 1 3 3341
70 % 4 6 2678
50 % 4 6 2706
40 % 4 6 2700
30 % 4 6 2685
Entity #9 | Chains: t,u,v,w,x,y
Pvc3 protein, length: 440 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 14917
95 % 1 1 15170
90 % 1 1 14930
70 % 1 1 14098
50 % 1 1 12821
40 % 6 6 7211
30 % 6 6 6763

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 6J0N 1 D, E, F, G, H, I Pvc9 291112