6J0N

Cryo-EM Structure of an Extracellular Contractile Injection System, baseplate in extended state, refined in C6 symmetry


Sequence Similarity Clusters for the Entities in PDB 6J0N

Entity #1 | Chains: D,E,F,G,H,I
Pvc9 protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 14569
95 % 1 1 16742
90 % 1 1 14606
70 % 1 1 13797
50 % 1 1 12536
40 % 2 2 10430
30 % 2 2 9642
Entity #2 | Chains: J,K,L,M,N,O
Pvc11 protein, length: 728 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 17990
95 % 1 1 16560
90 % 1 1 16312
70 % 1 1 15416
50 % 1 1 13776
40 % 1 1 11723
30 % 1 1 10647
Entity #3 | Chains: P,Q,R,S,T,U
Pvc12 protein, length: 950 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 14570
95 % 1 1 14825
90 % 1 1 14607
70 % 1 1 13798
50 % 1 1 12537
40 % 2 2 10416
30 % 2 2 9628
Entity #4 | Chains: V,W,X,Y,Z,a
Pvc4 protein, length: 410 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 17701
95 % 1 1 14826
90 % 1 1 16483
70 % 1 1 13799
50 % 1 1 12538
40 % 3 3 9271
30 % 3 3 8613
Entity #5 | Chains: b,c,d,e,f,g
Pvc7 protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 14571
95 % 1 1 16743
90 % 1 1 16482
70 % 1 1 15418
50 % 3 3 8697
40 % 3 3 8325
30 % 3 3 7782
Entity #6 | Chains: h,i,j,k,l,m
Pvc2 protein, length: 355 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 1841
95 % 1 3 2414
90 % 1 3 2462
70 % 1 3 2518
50 % 1 3 2555
40 % 6 8 2123
30 % 6 8 2148
Entity #7 | Chains: n,o,p,q,r,s
Pvc5 protein, length: 152 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 14572
95 % 1 1 14827
90 % 1 1 14608
70 % 1 1 13800
50 % 2 2 11101
40 % 2 2 10431
30 % 2 2 9643
Entity #8 | Chains: 1,2,3,4,5,z
Pvc1 protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 2483
95 % 1 3 3205
90 % 1 3 3278
70 % 4 6 2537
50 % 4 6 2569
40 % 4 6 2586
30 % 4 6 2571
Entity #9 | Chains: t,u,v,w,x,y
Pvc3 protein, length: 440 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 14573
95 % 1 1 14828
90 % 1 1 14609
70 % 1 1 13801
50 % 1 1 12539
40 % 6 6 7031
30 % 6 6 6602

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 6RAO 9 J Afp12 42906
2 6J0N 3 P, Q, R, S, T, U Pvc12 291112