6J0N

Cryo-EM Structure of an Extracellular Contractile Injection System, baseplate in extended state, refined in C6 symmetry


Sequence Similarity Clusters for the Entities in PDB 6J0N

Entity #1 | Chains: D,E,F,G,H,I
Pvc9 protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 14883
95 % 1 1 17099
90 % 1 1 14641
70 % 1 1 13834
50 % 1 1 12773
40 % 2 2 10631
30 % 2 2 9831
Entity #2 | Chains: J,K,L,M,N,O
Pvc11 protein, length: 728 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 16974
95 % 1 1 14869
90 % 1 1 14644
70 % 1 1 14054
50 % 1 1 12775
40 % 1 1 11923
30 % 1 1 10962
Entity #3 | Chains: P,Q,R,S,T,U
Pvc12 protein, length: 950 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 14884
95 % 1 1 15112
90 % 1 1 14863
70 % 1 1 14053
50 % 1 1 12774
40 % 2 2 10615
30 % 2 2 9814
Entity #4 | Chains: V,W,X,Y,Z,a
Pvc4 protein, length: 410 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 14885
95 % 1 1 17101
90 % 1 1 14645
70 % 1 1 14056
50 % 1 1 12776
40 % 3 3 9433
30 % 3 3 8766
Entity #5 | Chains: b,c,d,e,f,g
Pvc7 protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 18386
95 % 1 1 17100
90 % 1 1 16768
70 % 1 1 14055
50 % 3 3 8894
40 % 3 3 8480
30 % 3 3 7941
Entity #6 | Chains: h,i,j,k,l,m
Pvc2 protein, length: 355 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 1892
95 % 1 3 2475
90 % 1 3 2532
70 % 1 3 2599
50 % 1 3 2616
40 % 6 8 2126
30 % 6 8 2153
Entity #7 | Chains: n,o,p,q,r,s
Pvc5 protein, length: 152 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 14886
95 % 1 1 15113
90 % 1 1 14864
70 % 1 1 14057
50 % 2 2 11329
40 % 2 2 10632
30 % 2 2 9832
Entity #8 | Chains: 1,2,3,4,5,z
Pvc1 protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 2791
95 % 1 3 3243
90 % 1 3 3324
70 % 4 6 2667
50 % 4 6 2683
40 % 4 6 2691
30 % 4 6 2680
Entity #9 | Chains: t,u,v,w,x,y
Pvc3 protein, length: 440 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 14887
95 % 1 1 15114
90 % 1 1 14865
70 % 1 1 14058
50 % 1 1 12777
40 % 6 6 7195
30 % 6 6 6761

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 6J0N 4 V, W, X, Y, Z, a Pvc4 291112