6J0N

Cryo-EM Structure of an Extracellular Contractile Injection System, baseplate in extended state, refined in C6 symmetry


Sequence Similarity Clusters for the Entities in PDB 6J0N

Entity #1 | Chains: D,E,F,G,H,I
Pvc9 protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 19094
95 % 1 1 15418
90 % 1 1 17361
70 % 1 1 16120
50 % 1 1 12954
40 % 2 2 10925
30 % 2 2 10086
Entity #2 | Chains: J,K,L,M,N,O
Pvc11 protein, length: 728 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 19095
95 % 1 1 15705
90 % 1 1 17362
70 % 1 1 14465
50 % 1 1 13157
40 % 1 1 12285
30 % 1 1 11265
Entity #3 | Chains: P,Q,R,S,T,U
Pvc12 protein, length: 950 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 15460
95 % 1 1 15704
90 % 1 1 15405
70 % 1 1 14464
50 % 1 1 13156
40 % 2 2 10907
30 % 2 2 10069
Entity #4 | Chains: V,W,X,Y,Z,a
Pvc4 protein, length: 410 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 19096
95 % 1 1 17545
90 % 1 1 15153
70 % 1 1 14467
50 % 1 1 13158
40 % 3 3 9706
30 % 3 3 9019
Entity #5 | Chains: b,c,d,e,f,g
Pvc7 protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 15461
95 % 1 1 15706
90 % 1 1 15406
70 % 1 1 14466
50 % 3 3 9361
40 % 3 3 8627
30 % 3 3 8362
Entity #6 | Chains: h,i,j,k,l,m
Pvc2 protein, length: 355 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 2024
95 % 1 3 2610
90 % 1 3 2676
70 % 1 3 2724
50 % 1 3 2751
40 % 6 8 2307
30 % 6 8 2328
Entity #7 | Chains: n,o,p,q,r,s
Pvc5 protein, length: 152 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 15462
95 % 1 1 15707
90 % 1 1 15407
70 % 1 1 14468
50 % 2 2 11649
40 % 2 2 10926
30 % 2 2 10087
Entity #8 | Chains: 1,2,3,4,5,z
Pvc1 protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 2717
95 % 1 3 3464
90 % 1 3 3540
70 % 4 6 2725
50 % 4 6 2752
40 % 4 6 2774
30 % 4 6 2760
Entity #9 | Chains: t,u,v,w,x,y
Pvc3 protein, length: 440 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 15463
95 % 1 1 15708
90 % 1 1 15408
70 % 1 1 14469
50 % 1 1 13159
40 % 6 6 7494
30 % 6 6 7030

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 6J0N 4 V, W, X, Y, Z, a Pvc4 291112