6J0N

Cryo-EM Structure of an Extracellular Contractile Injection System, baseplate in extended state, refined in C6 symmetry


Sequence Similarity Clusters for the Entities in PDB 6J0N

Entity #1 | Chains: D,E,F,G,H,I
Pvc9 protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 15142
95 % 1 1 15373
90 % 1 1 15141
70 % 1 1 14180
50 % 1 1 12905
40 % 2 2 11277
30 % 2 2 9937
Entity #2 | Chains: J,K,L,M,N,O
Pvc11 protein, length: 728 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 15144
95 % 1 1 17401
90 % 1 1 17053
70 % 1 1 14182
50 % 1 1 12907
40 % 1 1 12077
30 % 1 1 11070
Entity #3 | Chains: P,Q,R,S,T,U
Pvc12 protein, length: 950 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 15143
95 % 1 1 15374
90 % 1 1 15142
70 % 1 1 14181
50 % 1 1 12906
40 % 2 2 10766
30 % 2 2 9938
Entity #4 | Chains: V,W,X,Y,Z,a
Pvc4 protein, length: 410 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 15146
95 % 1 1 15485
90 % 1 1 17055
70 % 1 1 14184
50 % 1 1 12908
40 % 3 3 9543
30 % 3 3 8876
Entity #5 | Chains: b,c,d,e,f,g
Pvc7 protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 15145
95 % 1 1 15375
90 % 1 1 15143
70 % 1 1 14183
50 % 3 3 9034
40 % 3 3 8635
30 % 3 3 8061
Entity #6 | Chains: h,i,j,k,l,m
Pvc2 protein, length: 355 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 1939
95 % 1 3 2600
90 % 1 3 2581
70 % 1 3 2623
50 % 1 3 2715
40 % 6 8 2257
30 % 6 8 2229
Entity #7 | Chains: n,o,p,q,r,s
Pvc5 protein, length: 152 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 15147
95 % 1 1 15376
90 % 1 1 15144
70 % 1 1 14185
50 % 2 2 11468
40 % 2 2 10778
30 % 2 2 9949
Entity #8 | Chains: 1,2,3,4,5,z
Pvc1 protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 2596
95 % 1 3 3419
90 % 1 3 3398
70 % 4 6 2616
50 % 4 6 2655
40 % 4 6 2666
30 % 4 6 2647
Entity #9 | Chains: t,u,v,w,x,y
Pvc3 protein, length: 440 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 15148
95 % 1 1 15377
90 % 1 1 15145
70 % 1 1 14186
50 % 1 1 12909
40 % 6 6 7347
30 % 6 6 6917

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 6J0N 5 b, c, d, e, f, g Pvc7 291112