6J0N

Cryo-EM Structure of an Extracellular Contractile Injection System, baseplate in extended state, refined in C6 symmetry


Sequence Similarity Clusters for the Entities in PDB 6J0N

Entity #1 | Chains: D,E,F,G,H,I
Pvc9 protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 14759
95 % 1 1 15007
90 % 1 1 14530
70 % 1 1 13933
50 % 1 1 14070
40 % 2 2 11076
30 % 2 2 9765
Entity #2 | Chains: J,K,L,M,N,O
Pvc11 protein, length: 728 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 14761
95 % 1 1 14747
90 % 1 1 16673
70 % 1 1 13935
50 % 1 1 12685
40 % 1 1 11897
30 % 1 1 10899
Entity #3 | Chains: P,Q,R,S,T,U
Pvc12 protein, length: 950 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 14760
95 % 1 1 15008
90 % 1 1 14793
70 % 1 1 13934
50 % 1 1 12684
40 % 2 2 10566
30 % 2 2 9766
Entity #4 | Chains: V,W,X,Y,Z,a
Pvc4 protein, length: 410 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 18276
95 % 1 1 16815
90 % 1 1 14534
70 % 1 1 13937
50 % 1 1 12686
40 % 3 3 9397
30 % 3 3 8728
Entity #5 | Chains: b,c,d,e,f,g
Pvc7 protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 14762
95 % 1 1 15009
90 % 1 1 14794
70 % 1 1 13936
50 % 3 3 8827
40 % 3 3 8457
30 % 3 3 7890
Entity #6 | Chains: h,i,j,k,l,m
Pvc2 protein, length: 355 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 1979
95 % 1 3 2459
90 % 1 3 2510
70 % 1 3 2575
50 % 1 3 2602
40 % 6 8 2136
30 % 6 8 2166
Entity #7 | Chains: n,o,p,q,r,s
Pvc5 protein, length: 152 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 14763
95 % 1 1 15010
90 % 1 1 14795
70 % 1 1 13938
50 % 2 2 11269
40 % 2 2 10582
30 % 2 2 9783
Entity #8 | Chains: 1,2,3,4,5,z
Pvc1 protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 2548
95 % 1 3 3342
90 % 1 3 3350
70 % 4 6 2578
50 % 4 6 2603
40 % 4 6 2612
30 % 4 6 2608
Entity #9 | Chains: t,u,v,w,x,y
Pvc3 protein, length: 440 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 14764
95 % 1 1 16969
90 % 1 1 14796
70 % 1 1 15605
50 % 1 1 14074
40 % 6 6 7153
30 % 6 6 6705

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 6J0N 6 h, i, j, k, l, m Pvc2 291112
2 6J0B 1 A, B, C, D, E, F, G, H, I, J, K, L Pvc2 291112
3 6J0C 1 A, B, C, D, E, F, a, b, c, d, e, f Pvc2 291112